1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tgtcattccatcacccgaggagcttaaacgaagtgcatactgtaaatggcataattcacactcgcatgctactaatgattgtaatgtttttcgtcgacagGTTCAATCGGCCATCAATGAAGGACGATTGAGGTTTGCTGAGAGCCCAAAAATGCAACTAGACAGTAATCCCTTTCCTGTCAATGTGATTGATTTTGAGA
species | Oryza sativa |
transcript | LOC_Os01g29450.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
atggcataattcacactcgcatgctactaatgattgtaatgtttttcgtcgacagGTTCAATCGGCCATCAATGAAGGACGATTGAGGTTTGCTGAGAGCCCAAAAATGCAACTAGACAGTAATCCCTTTCCTGTCAATGTGATTGATTTTGAGA
tactaat putative branch site (score: 1)
tttttcgtc putative PPT
attgtaatgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtcattccatcacccgaggagcttaaacgaagtgcatactgtaaatggcataattcacactcgcatgctactaatgattgtaatgtttttcgtcgacagGTTCAATCGGCCATCAATGAAGGACGATTGAGGTTTGCTGAGAGCCCAAAAATGCAACTAGACAGTAATCCCTTTCCTGTCAATGTGATTGATTTTGAGA
- -cattcca
- - - - - - - - - - - - -aaacgaa
- - - - - - - - - - - - - - - - -tgcatac
- - - - - - - - - - - - - - - - - - - - - - - tggcata
- - - - - - - - - - - - - - - - - - - - - - - - - - - ttcacac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgcatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgattgt