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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttattaactcaccttcctttgttcatggctgaatacgcttcattctgtatgttgacaacttggtgtatcgattttctgtaatacagGCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGCTCTTGATGTGGCCAACAAAATTGGCATCATTTAAGTTAGGGCGCTTTTT

Basic information

species Oryza sativa
transcript LOC_Os01g24690.3
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g24690.3 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G172153_T01 (Zea mays), 3'ss of exon 11
gttattaactcaccttcctttgttcatggctgaatacgct-tcattctgtatgttgacaacttggtgtatcgattttctgtaatacagGCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGCTCTTGATGTGGCCAACAAAAT--TGGCATCATTTAAGTTAGGGCGCTTTTT
||||  |  |   |     || ||      || |||  || | ||  |||    |    | ||  | | |  | | | | |  | ||||||||| || ||||||||||||||||||||||  |  || ||||||||||||||||||||||| |      |  | |  ||  |  |  | | |     |  
gttagcatttggtccagtgttattttcttgtgcataatctattatgttgtgcaattgtgagttaat-tcttaactgtgtctg-tccagGCCTGATGGAAAGAAGAAGGCTTACGTGAAGCCTATGCCTGACTATGATGCTCTTGATGTGGCGAGGTGCCTGCTAGACTCGGTGGAAGTGGAGTTTAGT--

upper sequence: LOC_Os01g24690.3 (Oryza sativa), 3'ss of exon 2
lower sequence: AT2G39460.1 (Arabidopsis thaliana), 3'ss of exon 2
gttattaactcaccttcctttgttcatggctgaatacgc--ttcattctgtatgttgacaacttggtgtatcgattttctgtaatacagGCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGCTCTTGATGTGGCCAACAAAATTGGCATCATTTAAGTTAGGGCGCTTTTT
||  || |   |   |  ||   | | | ||   |  |   || ||| |||    | | |  |     ||| | ||   | |  ||||||||||| || |  |||||||||||||||| ||| || ||||||||||||||| | ||||| || ||||| || |||||||| |||||         | | 
gtactttaaagagtatttttctatgaagccttgttgtgagattgattatgttcaat-atatttgacactatggtttggttttgttacagGCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACACCAGACTATGATGCTTTGGATGTTGCTAACAAGATCGGCATCATCTAAGTCTATCTATCTCTG

upper sequence: LOC_Os01g24690.3 (Oryza sativa), 3'ss of exon 2
lower sequence: Vv06s0004g04090.t01 (Vitis vinifera), 3'ss of exon 3
----gtt--attaactcaccttcctttgttcatggct-gaatacgcttcattctgta-----tgttgacaact-tggtgtatcgattttctgtaatacagGCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGCTCTTGATGTGGCCAACAAAATTGGCATCATTTAAGTTAGGGCGCTTTTT
     ||  || |||| |  |     | | |   ||  ||||   |||      | |     | | ||||||| |  ||     | ||| ||| || ||||||||| || |  |||||||| || || | | | || ||||||||||||||  | |||||||||||||||||||| ||||| |||| ||||     | | 
ttagattggataaacttaattatgaatatcctgagcaagaatgttcttttgctgggaaatattttcgacaactcttctgacattaatttttgtgatccagGCCTGATGGTACCAAGAAGGCGTATGTTAGGTTGACCCCAGACTATGATGCCTTGGATGTGGCCAACAAAATTGGGATCATCTAAGGTAGGATCTGTCTA

upper sequence: LOC_Os01g24690.3 (Oryza sativa), 3'ss of exon 2
lower sequence: PP1S459_11V6.1 (Physcomitrella patens), 3'ss of exon 1
--------gttattaactcaccttcctttgttcatggctgaatacgcttcattct-gtatgttgacaacttggtgta-tcgattttctgtaata---cagGCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGCTCTTGATGTGGCCAACAAAATTGGCATCATTTAAGTTAGGGCGCTTTTT
         ||   |  ||   ||  |||| |     |||    |  | |  ||| | ||||  |     |  |||  || | ||| | || |    ||||||||| ||    ||||||||||||||||  || ||  |||| |||||||| ||||||||||||||||| || || ||||| ||| ||          ||
taattttttttgggatttcgtattgatttgatatcacctgttcccattcctctctaggatgtgaaatttctaatgtggtcaaatttatctattttctcagGCCTGATGGAGCCAAGAAGGCTTACGTGAGACTGACAGCAGATTATGATGCGCTTGATGTGGCCAACAAGATCGGTATCATATAAATTTTCTGTTCAATT

upper sequence: LOC_Os01g24690.3 (Oryza sativa), 3'ss of exon 2
lower sequence: PP1S146_96V6.1 (Physcomitrella patens), 3'ss of exon 1
---gttattaactcaccttc----------ctttgttcatggctgaatacgc--ttcattctgtatgttgacaacttggtgtatcgattttctgtaatacagGCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGCTCTTGATGTGGCCAACAAAATTGGCATCATTTAAGTTAGGGCGCTTTTT
   |||| | || | | |            ||  || ||  ||  ||  |||  |||| |    || |      || |  |||||   ||| | |    ||| ||||| ||   |||||||||||| |||| | | ||  |||| || || ||||||||||| |||||||| ||||||||||||||  ||     ||| || 
gtagttactgacgctcgtctggtaggaaaactgggtgcaatgcgtaagtcgccgttcaattctcatctacgtggct-gacgtatcctgtttttttc-cccagACCTGATGGAGCGAAGAAGGCTTATGTGAGGTTGACGGCAGATTACGACGCTCTTGATGTTGCCAACAAGATTGGCATCATTTAGATTGCATTGCTCTTA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88367963|gb|CI561551.1|CI561551
EST:     GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAG                         GCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
genomic: GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAGgttattaact ... tgtaatacagGCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
EST: gi|58674682|gb|CK063369.1|CK063369
EST:     GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAG                         GCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
genomic: GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAGgttattaact ... tgtaatacagGCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
EST: gi|55413740|gb|CV726116.1|CV726116
EST:     GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAG                         GCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
genomic: GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAGgttattaact ... tgtaatacagGCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
EST: gi|88239729|gb|CI238891.1|CI238891
EST:     GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAG                         GCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCCGAACTATGATG
genomic: GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAGgttattaact ... tgtaatacagGCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGA-CTATGATG
EST: gi|86419910|gb|CI054711.1|CI054711
EST:     GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAG                         GCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
genomic: GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAGgttattaact ... tgtaatacagGCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
EST: gi|87027057|gb|CI261504.1|CI261504
EST:     GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAG                         GCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
genomic: GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAGgttattaact ... tgtaatacagGCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
EST: gi|88212437|gb|CI212077.1|CI212077
EST:     GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAG                         GTCTGACGGCGAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
genomic: GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAGgttattaact ... tgtaatacagGCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
EST: gi|88274663|gb|CI395069.1|CI395069
EST:     GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAG                         GCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
genomic: GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAGgttattaact ... tgtaatacagGCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
EST: gi|88538754|gb|CI467811.1|CI467811
EST:     GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAG                         GCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
genomic: GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAGgttattaact ... tgtaatacagGCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
EST: gi|88210590|gb|CI210439.1|CI210439
EST:     GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAG                         GCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
genomic: GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAGgttattaact ... tgtaatacagGCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
EST: gi|86511891|gb|CI154524.1|CI154524
EST:     GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAG                         GCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
genomic: GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAGgttattaact ... tgtaatacagGCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
EST: gi|88523238|gb|CI451045.1|CI451045
EST:     GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAG                         GCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
genomic: GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAGgttattaact ... tgtaatacagGCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
EST: gi|86527517|gb|CI167723.1|CI167723
EST:     GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAG                         GCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
genomic: GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAGgttattaact ... tgtaatacagGCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
EST: gi|88207916|gb|CI207765.1|CI207765
EST:     GTCAAGAAGATGTATGACATTCAGGCAAAGAAAGTTAACACTCTGATCAG                         GCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
genomic: GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAGgttattaact ... tgtaatacagGCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
EST: gi|88243681|gb|CI242803.1|CI242803
EST:     GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAG                         GCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
genomic: GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAGgttattaact ... tgtaatacagGCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
EST: gi|88420159|gb|CI513840.1|CI513840
EST:     GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAG                         GCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCAGTCCAGACTATGATGC
genomic: GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAGgttattaact ... tgtaatacagGCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
EST: gi|88209742|gb|CI209591.1|CI209591
EST:     GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAG                         GCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
genomic: GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAGgttattaact ... tgtaatacagGCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
EST: gi|88276063|gb|CI396667.1|CI396667
EST:     GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAG                         GCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
genomic: GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAGgttattaact ... tgtaatacagGCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
EST: gi|86523747|gb|CI163953.1|CI163953
EST:     GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAG                         GCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
genomic: GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAGgttattaact ... tgtaatacagGCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
EST: gi|88557126|gb|CI487509.1|CI487509
EST:     GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAG                         GCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
genomic: GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAGgttattaact ... tgtaatacagGCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
EST: gi|86531455|gb|CI171661.1|CI171661
EST:     GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAG                         GCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
genomic: GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAGgttattaact ... tgtaatacagGCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
EST: gi|86506288|gb|CI148921.1|CI148921
EST:     GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAG                         GCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
genomic: GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAGgttattaact ... tgtaatacagGCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
EST: gi|88462618|gb|CI517147.1|CI517147
EST:     GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAG                         GCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
genomic: GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAGgttattaact ... tgtaatacagGCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
EST: gi|86251184|gb|CI055317.1|CI055317
EST:     GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAG                         GCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
genomic: GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAGgttattaact ... tgtaatacagGCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
EST: gi|86543889|gb|CI184095.1|CI184095
EST:     GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAG                         GCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
genomic: GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAGgttattaact ... tgtaatacagGCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
EST: gi|86867882|gb|CI342767.1|CI342767
EST:     GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAG                         GCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCGCTCCAGACTATGATGC
genomic: GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAGgttattaact ... tgtaatacagGCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
EST: gi|86595367|gb|CI262605.1|CI262605
EST:     GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAG                         GCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
genomic: GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAGgttattaact ... tgtaatacagGCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
EST: gi|86511958|gb|CI154591.1|CI154591
EST:     GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAG                         GCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
genomic: GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAGgttattaact ... tgtaatacagGCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
EST: gi|88213467|gb|CI213316.1|CI213316
EST:     GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAG                         GCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
genomic: GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAGgttattaact ... tgtaatacagGCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
EST: gi|86829181|gb|CI282888.1|CI282888
EST:     GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAG                         GCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
genomic: GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAGgttattaact ... tgtaatacagGCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
EST: gi|86532056|gb|CI172262.1|CI172262
EST:     GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAG                         GCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
genomic: GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAGgttattaact ... tgtaatacagGCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
EST: gi|55431278|gb|CV728652.1|CV728652
EST:     GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAG                         GCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
genomic: GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAGgttattaact ... tgtaatacagGCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
EST: gi|89199115|gb|CI255381.1|CI255381
EST:     GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAG                         GCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
genomic: GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAGgttattaact ... tgtaatacagGCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
EST: gi|86424017|gb|CI062778.1|CI062778
EST:     GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAG                         GCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
genomic: GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAGgttattaact ... tgtaatacagGCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
EST: gi|86511434|gb|CI154067.1|CI154067
EST:     GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAG                         GCCTGACGGCAAGAAGAAGGCTTACGTGAGGCTCACTCCAGACTATGATGC
genomic: GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAGgttattaact ... tgtaatacagGCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
EST: gi|88987205|gb|CI034218.1|CI034218
EST:     GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAG                         GCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
genomic: GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAGgttattaact ... tgtaatacagGCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
EST: gi|86531633|gb|CI171839.1|CI171839
EST:     GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAG                         GCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
genomic: GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAGgttattaact ... tgtaatacagGCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
EST: gi|88980382|gb|CI026600.1|CI026600
EST:     GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAG                         GCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
genomic: GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAGgttattaact ... tgtaatacagGCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
EST: gi|86417136|gb|CI031345.1|CI031345
EST:     GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAG                         GCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
genomic: GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAGgttattaact ... tgtaatacagGCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
EST: gi|58589356|gb|CF987664.1|CF987664
EST:     GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAG                         GCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGAT
genomic: GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAGgttattaact ... tgtaatacagGCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGAT
EST: gi|86829373|gb|CI285025.1|CI285025
EST:     GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAG                         GCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
genomic: GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAGgttattaact ... tgtaatacagGCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
EST: gi|87010401|gb|CI281291.1|CI281291
EST:     GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAG                         GCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
genomic: GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAGgttattaact ... tgtaatacagGCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
EST: gi|86531314|gb|CI171520.1|CI171520
EST:     GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAG                         GCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
genomic: GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAGgttattaact ... tgtaatacagGCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
EST: gi|86509876|gb|CI152509.1|CI152509
EST:     GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAG                         GCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
genomic: GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAGgttattaact ... tgtaatacagGCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
EST: gi|88239575|gb|CI240052.1|CI240052
EST:     GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAG                         GCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
genomic: GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAGgttattaact ... tgtaatacagGCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
EST: gi|86529076|gb|CI169282.1|CI169282
EST:     GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAG                         GCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
genomic: GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAGgttattaact ... tgtaatacagGCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
EST: gi|88207054|gb|CI206903.1|CI206903
EST:     GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAG                         GCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
genomic: GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAGgttattaact ... tgtaatacagGCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
EST: gi|13806874|gb|AU181711.1|AU181711
EST:     GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAG                         GCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
genomic: GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAGgttattaact ... tgtaatacagGCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
EST: gi|88201350|gb|CI201705.1|CI201705
EST:     GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAG                         GCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
genomic: GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAGgttattaact ... tgtaatacagGCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
EST: gi|88975448|gb|CI023699.1|CI023699
EST:     GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAG                         GCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
genomic: GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAGgttattaact ... tgtaatacagGCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
EST: gi|88474276|gb|CI411547.1|CI411547
EST:     GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAG                         GCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
genomic: GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAGgttattaact ... tgtaatacagGCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
EST: gi|86532424|gb|CI172630.1|CI172630
EST:     GTCAAGAAGATGTATGACATCCAGGCAATGAAAGTTAACACTCTGATCAG                         GCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
genomic: GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAGgttattaact ... tgtaatacagGCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
EST: gi|88474172|gb|CI411443.1|CI411443
EST:     GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAG                         GCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
genomic: GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAGgttattaact ... tgtaatacagGCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
EST: gi|88995928|gb|CI037219.1|CI037219
EST:     GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAG                         GCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
genomic: GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAGgttattaact ... tgtaatacagGCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
EST: gi|88206241|gb|CI206090.1|CI206090
EST:     GTCAAGAAGATGTTTGACATCCAGGCAAAGAAAGTTAACACTCTGATCAG                         GCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
genomic: GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAGgttattaact ... tgtaatacagGCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
EST: gi|86533908|gb|CI174114.1|CI174114
EST:     GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAG                         GCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
genomic: GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAGgttattaact ... tgtaatacagGCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
EST: gi|86595487|gb|CI264584.1|CI264584
EST:     GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAG                         GCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
genomic: GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAGgttattaact ... tgtaatacagGCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
EST: gi|88213535|gb|CI213384.1|CI213384
EST:     GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAG                         GCCTGACGGCAAGAGGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
genomic: GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAGgttattaact ... tgtaatacagGCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
EST: gi|88829721|gb|CI074591.1|CI074591
EST:     GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAG                         GCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
genomic: GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAGgttattaact ... tgtaatacagGCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
EST: gi|87016922|gb|CI284256.1|CI284256
EST:     GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAG                         GCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
genomic: GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAGgttattaact ... tgtaatacagGCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
EST: gi|88244548|gb|CI243670.1|CI243670
EST:     GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAG                         GCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
genomic: GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAGgttattaact ... tgtaatacagGCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
EST: gi|15849339|gb|BI797615.1|BI797615
EST:     GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAG                         GCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
genomic: GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAGgttattaact ... tgtaatacagGCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
EST: gi|87030080|gb|CI261623.1|CI261623
EST:     GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAG                         GCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
genomic: GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAGgttattaact ... tgtaatacagGCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
EST: gi|89187464|gb|CI264283.1|CI264283
EST:     GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAG                         GCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
genomic: GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAGgttattaact ... tgtaatacagGCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
EST: gi|86543102|gb|CI183308.1|CI183308
EST:     GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAG                         GCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
genomic: GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAGgttattaact ... tgtaatacagGCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
EST: gi|86513103|gb|CI155736.1|CI155736
EST:     GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAG                         GCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
genomic: GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAGgttattaact ... tgtaatacagGCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
EST: gi|86530171|gb|CI170377.1|CI170377
EST:     GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAG                         GCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
genomic: GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAGgttattaact ... tgtaatacagGCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
EST: gi|86531990|gb|CI172196.1|CI172196
EST:     GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAG                         GCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
genomic: GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAGgttattaact ... tgtaatacagGCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
EST: gi|88977538|gb|CI025274.1|CI025274
EST:     GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAG                         GCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
genomic: GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAGgttattaact ... tgtaatacagGCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
EST: gi|86417613|gb|CI031822.1|CI031822
EST:     GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAG                         GCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
genomic: GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAGgttattaact ... tgtaatacagGCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
EST: gi|88468491|gb|CI514973.1|CI514973
EST:     GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAG                         GCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
genomic: GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAGgttattaact ... tgtaatacagGCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
EST: gi|89167266|gb|CI252797.1|CI252797
EST:     GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAG                         GCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
genomic: GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAGgttattaact ... tgtaatacagGCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
EST: gi|86594600|gb|CI253499.1|CI253499
EST:     GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAG                         GCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC
genomic: GTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAGgttattaact ... tgtaatacagGCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatacgcttcattctgtatgttgacaacttggtgtatcgattttctgtaatacagGCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGCTCTTGATGTGGCCAACAAAATTGGCATCATTTAAGTTAGGGCGCTTTTT
                  tgttgac  putative branch site (score: 3)
                                        ttttctgt  putative PPT
                                       attttct  TA-rich tract