1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tatatatagttgctcatcttgggacaaggatggaatggcctcatgatggttcttgcttttgcattggcttgtttaatttgttgtttctctgctgctgcagTGTAACAGCACAGAGACAGGTTCAGCTCTTAAGAAGGCTAGGGTTCAAGCCTCTTCTTCAGCGCAATCTACCCTAAAG
species | Oryza sativa |
transcript | LOC_Os01g13000.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
atggttcttgcttttgcattggcttgtttaatttgttgtttctctgctgctgcagTGTAACAGCACAGAGACAGGTTCAGCTCTTAAGAAGGCTAGGGTTCAAGCCTCTTCTTCAGCGCAATCTACCCTAAAG
gtttaat putative branch site (score: 4)
tttctctgct putative PPT
tttaatttgttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatatatagttgctcatcttgggacaaggatggaatggcctcatgatggttcttgcttttgcattggcttgtttaatttgttgtttctctgctgctgcagTGTAACAGCACAGAGACAGGTTCAGCTCTTAAGAAGGCTAGGGTTCAAGCCTCTTCTTCAGCGCAATCTACCCTAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - -agttgct
- - - - - - - - - - - - - - - tggaatg
- - - - - - - - - - - - - - - - - - - - -catgatg
- - - - - - - - - - - - - - - - - - - - - - - - -ttcttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ttttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggcttg