1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
gtatgtttacctgtcctggttaaataatttagtaaccaaatttaatcttgaacccatgatggaatagtaaatgtacttcagaacgagtacttaataaaagcggccatctaattacgcagGTATTACACCGTCCTTTTCGGAGTTTCGAGGAGCATAGGCATAGGATCCCAG
species | Oryza sativa |
transcript | LOC_Os11g33240.1 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: GATGCTCACAGTGGAGTTCTGCTGAACCACTTTGGATTATCTGAAGCTCG GTATTACACCGTCCTTTTCGGAGTTTCGAGGAGCATAGGCATAGGATCCCAEST: gi|86504183|gb|CI146816.1|CI146816
genomic: GATGCTCACAGTGGAGTTCTGCTGAACCACTTTGGATTATCTGAAGCTCGgtatgtttac ... aattacgcagGTATTACACCGTCCTTTTCGGAGTTTCGAGGAGCATAGGCATAGGATCCCA
EST: GATGCTCACAGTGGAGTTCTGCTGAACCACTTTGGATTATCTGAAGCTCG GTATTACACCGTCCTTTTCGGAGTTTCGAGGAGCATAGGCATAGGATCCCAEST: gi|89175851|gb|CI042872.1|CI042872
genomic: GATGCTCACAGTGGAGTTCTGCTGAACCACTTTGGATTATCTGAAGCTCGgtatgtttac ... aattacgcagGTATTACACCGTCCTTTTCGGAGTTTCGAGGAGCATAGGCATAGGATCCCA
EST: GATGCTCACAGTGGAGTTCTGCTGAACCACTTTGGATTATCTGAAGCTCG GTATTACACCGTCCTTTTCGGAGTTTCGAGGAGCATAGGCATAGGATCCCAEST: gi|88266492|gb|CI377394.1|CI377394
genomic: GATGCTCACAGTGGAGTTCTGCTGAACCACTTTGGATTATCTGAAGCTCGgtatgtttac ... aattacgcagGTATTACACCGTCCTTTTCGGAGTTTCGAGGAGCATAGGCATAGGATCCCA
EST: TATCTGAAGCTCG GTATTACACCGTCCTTTTCGGAGTTTCGAGGAGCATAGGCATAGGATCCCAEST: gi|88255207|gb|CI354031.1|CI354031
genomic: TATCTGAAGCTCGgtatgtttac ... aattacgcagGTATTACACCGTCCTTTTCGGAGTTTCGAGGAGCATAGGCATAGGATCCCA
EST: ATGCTCACAGTGGAGTTCTGCTGAACCACTTTGGATTATCTGAAGCTCG GTATTACACCGTCCTTTTCGGAGTTTCGAGGAGCATAGGCATAGGATCCCAEST: gi|86500499|gb|CI143132.1|CI143132
genomic: ATGCTCACAGTGGAGTTCTGCTGAACCACTTTGGATTATCTGAAGCTCGgtatgtttac ... aattacgcagGTATTACACCGTCCTTTTCGGAGTTTCGAGGAGCATAGGCATAGGATCCCA
EST: GATGCTCACAGTGGAGTTCTGCTGAACCACTTTGGATTATCTGAAGCTCG GTATTACACCGTCCTTTTCGGAGTTTCGAGGAGCATAGGCATAGGATCCCAEST: gi|88247059|gb|CI246908.1|CI246908
genomic: GATGCTCACAGTGGAGTTCTGCTGAACCACTTTGGATTATCTGAAGCTCGgtatgtttac ... aattacgcagGTATTACACCGTCCTTTTCGGAGTTTCGAGGAGCATAGGCATAGGATCCCA
EST: TGCTGAACCACTTTGGATTATCTGGAGCTCG GTATTACACCGTCCTTTTCGGAGTTTCGAGGAGCATAGGCATAGGATCCCAEST: gi|89186485|gb|CI048157.1|CI048157
genomic: TGCTGAACCACTTTGGATTATCTGAAGCTCGgtatgtttac ... aattacgcagGTATTACACCGTCCTTTTCGGAGTTTCGAGGAGCATAGGCATAGGATCCCA
EST: GATGCTCACAGTGGAGTTCTGCTGAACCACTTTGGATTATCTGAAGCTCG GTATTACACCGTCCTTTTCGGAGTTTCGAGGAGCATAGGCATAGGATCCCAEST: gi|86480028|gb|CI122661.1|CI122661
genomic: GATGCTCACAGTGGAGTTCTGCTGAACCACTTTGGATTATCTGAAGCTCGgtatgtttac ... aattacgcagGTATTACACCGTCCTTTTCGGAGTTTCGAGGAGCATAGGCATAGGATCCCA
EST: GATGCTCACAGTGGAGTTCTGCTGAACCACTTTGGATTATCTGAAGCTCG GTATTACACCGTCCTTTTCGGAGTTTCGAGGAGCATAGGCATAGGATCCCA
genomic: GATGCTCACAGTGGAGTTCTGCTGAACCACTTTGGATTATCTGAAGCTCGgtatgtttac ... aattacgcagGTATTACACCGTCCTTTTCGGAGTTTCGAGGAGCATAGGCATAGGATCCCA
tagtaaatgtacttcagaacgagtacttaataaaagcggccatctaattacgcagGTATTACACCGTCCTTTTCGGAGTTTCGAGGAGCATAGGCATAGGATCCCAG
atctaat putative branch site (score: 7)
agtacttaataaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtttacctgtcctggttaaataatttagtaaccaaatttaatcttgaacccatgatggaatagtaaatgtacttcagaacgagtacttaataaaagcggccatctaattacgcagGTATTACACCGTCCTTTTCGGAGTTTCGAGGAGCATAGGCATAGGATCCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA