1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
gtaagtcgccactctctagtaactagtcacacctttgtttatttttatccaaaaatcttaccctgcatgcactgcataatgcagATGAAGAGGAGAGTGGACAGAGCTAAGACCGGCAAATATTCAGTGTAAATATCCAAGGGTCAAAGAAAAGGACAAGATATTGTTTTTGCAGGCAACTCCT
species | Oryza sativa |
transcript | LOC_Os08g40530.1 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: CTCCCAGGATTATTTCAAGCCTACTTGTTGGAGAAGAGCTTCACGGCGAG ATGAAGAGGAGAGTGGACAGAGCTAAGACCGGCAAATATTCAGTGTAAATAEST: gi|33812490|gb|CF332133.1|CF332133
genomic: CTCC-AGGATTATTTCAAGCCTACTTGTTGGAGAAGAGCTTCACGGCGAGgtaagtcgcc ... cataatgcagATGAAGAGGAGAGTGGACAGAGCTAAGACCGGCAAATATTCAGTGTAAATA
EST: TCTCCAGGATTATTTCAAGCCTACTTGTTGGAGAAGAGCTTCACGGCGAG ATGAAGAGGAGAGTGGACAGAGCTAAGACCGGCAAATATTCAGTGTAAATAEST: gi|58690194|gb|CK078881.1|CK078881
genomic: TCTCCAGGATTATTTCAAGCCTACTTGTTGGAGAAGAGCTTCACGGCGAGgtaagtcgcc ... cataatgcagATGAAGAGGAGAGTGGACAGAGCTAAGACCGGCAAATATTCAGTGTAAATA
EST: TCTCCAGGATTATTTCAAGCCTACTTGTTGGAGAAGAGCTTCACGGCGAG ATGAAGAGGAGAGTGGACAGAGCTAAGACCGGCAAATATTCAGTGTAAATAEST: gi|23322134|gb|BU572379.1|BU572379
genomic: TCTCCAGGATTATTTCAAGCCTACTTGTTGGAGAAGAGCTTCACGGCGAGgtaagtcgcc ... cataatgcagATGAAGAGGAGAGTGGACAGAGCTAAGACCGGCAAATATTCAGTGTAAATA
EST: TCTCCAGGATTATTTCAAGCCTACTTGTTGGAGAAGAGCTTCACGGCGAG ATGAAGAGGAGAGTGGACAGAGCTAAGACCGGCAAATATTCAGTGTAAATA
genomic: TCTCCAGGATTATTTCAAGCCTACTTGTTGGAGAAGAGCTTCACGGCGAGgtaagtcgcc ... cataatgcagATGAAGAGGAGAGTGGACAGAGCTAAGACCGGCAAATATTCAGTGTAAATA
cacctttgtttatttttatccaaaaatcttaccctgcatgcactgcataatgcagATGAAGAGGAGAGTGGACAGAGCTAAGACCGGCAAATATTCAGTGTAAATATCCAAGGGTCAAAGAAAAGGACAAGATATTGTTTTTGCAGGCAACTCCT
atcttac putative branch site (score: 3)
tttatttttatccaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtcgccactctctagtaactagtcacacctttgtttatttttatccaaaaatcttaccctgcatgcactgcataatgcagATGAAGAGGAGAGTGGACAGAGCTAAGACCGGCAAATATTCAGTGTAAATATCCAAGGGTCAAAGAAAAGGACAAGATATTGTTTTTGCAGGCAACTCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA