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...caagtgtgttttagttcattttattctactagtttaacaaggctaaaatatttgatgacactgatgggaatgtttcttgaactgtccaaatgaatttcagTTTATCCAATTGCGACTGGATCCAGCTAGTGGCAACATTGTTCCAGCTAGTGGCAATGGTTCAGTTACTCAAGGGTTCAGTGTCACCAATAACCAACATG
species | Oryza sativa |
transcript | LOC_Os02g56110.1 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: TGACATCCAGTTCTTATACGGATTTTGTTTTTCAGGCAGCTGTTCCAAAG TTTATCCAATTGCGACTGGATCCAGCTAGTGGCAACATTGTTCCAGCTAGTEST: gi|88834673|gb|CI077956.1|CI077956
genomic: TGACATCCAGTTCTTATACGGATTTTGTTTTTCAGGCAGCTGTTCCAAAGgtagcatcat ... tgaatttcagTTTATCCAATTGCGACTGGATCCAGCTAGTGGCAACATTGTTCCAGCTAGT
EST: TTTTCAGGCAGCTGTTCCAAAG TTGATCCAATTGCGACTGGATCCAGCTAGTGGCAACATTGTTCCAGCTAGTEST: gi|87035932|gb|CI190554.1|CI190554
genomic: TTTTCAGGCAGCTGTTCCAAAGgtagcatcat ... tgaatttcagTTTATCCAATTGCGACTGGATCCAGCTAGTGGCAACATTGTTCCAGCTAGT
EST: TGACATCCAGTTCTTATACGGATTTTGTTTTTCAGGCAGCTGTTCCAAAG TTTATCCAATTGCGACTGGATCCAGCTAGTGGCAACATTGTTCCAGCTAGTEST: gi|87040668|gb|CI195290.1|CI195290
genomic: TGACATCCAGTTCTTATACGGATTTTGTTTTTCAGGCAGCTGTTCCAAAGgtagcatcat ... tgaatttcagTTTATCCAATTGCGACTGGATCCAGCTAGTGGCAACATTGTTCCAGCTAGT
EST: TGACATCCAGTTCTTATACGGATTTTGTTTTTCAGGCAGCTGTTCCAAAG TTTATCCAATTGCGACTGGATCCAGCTAGTGGCAACATTGTTCCAGCTAGTEST: gi|88839114|gb|CI378038.1|CI378038
genomic: TGACATCCAGTTCTTATACGGATTTTGTTTTTCAGGCAGCTGTTCCAAAGgtagcatcat ... tgaatttcagTTTATCCAATTGCGACTGGATCCAGCTAGTGGCAACATTGTTCCAGCTAGT
EST: TGACATCCAGTTCTTATACGGATTTTGTTTTTCAGGCAGCTGTTCCAAAG TTTATCCAATTGCGACTGGATCCAGCTAGTGGCAACATTGTTCCAGCTAGTEST: gi|87035931|gb|CI190553.1|CI190553
genomic: TGACATCCAGTTCTTATACGGATTTTGTTTTTCAGGCAGCTGTTCCAAAGgtagcatcat ... tgaatttcagTTTATCCAATTGCGACTGGATCCAGCTAGTGGCAACATTGTTCCAGCTAGT
EST: TGACATCCAGTTCTTATACGGATTTTGTTTTTCAGGCAGCTGTTCCAAAG TTTATCCAATTGCGACTGGATCCAGCTAGTGGCAACATTGTTCCAGCTAGTEST: gi|86479948|gb|CI122581.1|CI122581
genomic: TGACATCCAGTTCTTATACGGATTTTGTTTTTCAGGCAGCTGTTCCAAAGgtagcatcat ... tgaatttcagTTTATCCAATTGCGACTGGATCCAGCTAGTGGCAACATTGTTCCAGCTAGT
EST: AGGCAGCTGTTCCAAAG TTTATCCAATTGCGACTGGATCCAGCTAGTGGCAACATTGTTCCAGCTAGT
genomic: AGGCAGCTGTTCCAAAGgtagcatcat ... tgaatttcagTTTATCCAATTGCGACTGGATCCAGCTAGTGGCAACATTGTTCCAGCTAGT
aaatatttgatgacactgatgggaatgtttcttgaactgtccaaatgaatttcagTTTATCCAATTGCGACTGGATCCAGCTAGTGGCAACATTGTTCCAGCTAGTGGCAATGGTTCAGTTACTCAAGGGTTCAGTGTCACCAATAACCAACATG
cactgat putative branch site (score: 3)
aaatgaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caagtgtgttttagttcattttattctactagtttaacaaggctaaaatatttgatgacactgatgggaatgtttcttgaactgtccaaatgaatttcagTTTATCCAATTGCGACTGGATCCAGCTAGTGGCAACATTGTTCCAGCTAGTGGCAATGGTTCAGTTACTCAAGGGTTCAGTGTCACCAATAACCAACATG
- - tgtgttt
- - - - - - - - - - - - - - - - - - - - - - - - - -ttgatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgatgg