1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
...ttggaacaagagaagctattccacaccgtttgcatttgtgtacataaccactgtttgtcttccttcacgggcatataactagtatatggaaaatttgcagTGATTCAGTGCTGAAGCATTCGTCGAGTGACTTCAAAAAGCTTGGTCAGCGTATATTTGTGTTTGTCATTGGTGGCGCCACTCGGTCGGAG
species | Oryza sativa |
transcript | LOC_Os02g25580.1 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: GGTACATGGGCTCGGCCACGTGGCTCTGATGATGGGTATTCAAG TGATTCAGTGCTGAAGCATTCGTGGAGTGACTTCAAAAAGCTTGGTCAGCGEST: gi|86502532|gb|CI145165.1|CI145165
genomic: GGTACATGGGCTCGGCCACGTGGCTCTGATGATGGGTATTCAAGgtcagtggta ... aaatttgcagTGATTCAGTGCTGAAGCATTCGTCGAGTGACTTCAAAAAGCTTGGTCAGCG
EST: ACAGGTGGTACATGGGCTCGGCCACGTGGCTCTGATGATGGGTATTCAAG TGATTCAGTGCTGAAGCATTCGTCGAGTGACTTCAAAAAGCTTGGTCAGCGEST: gi|218505032|gb|FG952958.1|FG952958
genomic: ACAGGTGGTACATGGGCTCGGCCACGTGGCTCTGATGATGGGTATTCAAGgtcagtggta ... aaatttgcagTGATTCAGTGCTGAAGCATTCGTCGAGTGACTTCAAAAAGCTTGGTCAGCG
EST: ACAGGTGGTACATGGGCTCGGCCACGTGGCTCTGATGATGGGTATTCAAG TGATTCAGTGCTGAAGCATTCGTCGAGTGACTTCAAAAAGCTTGGTCAGCGEST: gi|38481465|gb|CF965554.1|CF965554
genomic: ACAGGTGGTACATGGGCTCGGCCACGTGGCTCTGATGATGGGTATTCAAGgtcagtggta ... aaatttgcagTGATTCAGTGCTGAAGCATTCGTCGAGTGACTTCAAAAAGCTTGGTCAGCG
EST: ACAGGTGGTACATGGGCTCGGCCACGTGGCTCTGATGATGGGTATTCAAG TGATTCAGTGCTGAAGCATTCGTCGAGTGACTTCAAAAAGCTTGGTCAGCGEST: gi|163922673|gb|EG714174.1|EG714174
genomic: ACAGGTGGTACATGGGCTCGGCCACGTGGCTCTGATGATGGGTATTCAAGgtcagtggta ... aaatttgcagTGATTCAGTGCTGAAGCATTCGTCGAGTGACTTCAAAAAGCTTGGTCAGCG
EST: GGTGGTACATGGGCTCGGCCACGTGGCTCTGATGATGGGTATTCAAG TGATTCAGTGCTGAAGCATTCGTCGAGTGACTTCAAAAAGCTTGGTCAGCGEST: gi|29626796|gb|CB631807.1|CB631807
genomic: GGTGGTACATGGGCTCGGCCACGTGGCTCTGATGATGGGTATTCAAGgtcagtggta ... aaatttgcagTGATTCAGTGCTGAAGCATTCGTCGAGTGACTTCAAAAAGCTTGGTCAGCG
EST: ACAGGTGGTACATGGGCTCGGCCACGTGGCTCTGATGATGGGTATTCAAG TGATTCAGTGCTGAAGCATTCGTCGAGTGACTTCAAAAAGCTTGGTCAGCGEST: gi|29626758|gb|CB631769.1|CB631769
genomic: ACAGGTGGTACATGGGCTCGGCCACGTGGCTCTGATGATGGGTATTCAAGgtcagtggta ... aaatttgcagTGATTCAGTGCTGAAGCATTCGTCGAGTGACTTCAAAAAGCTTGGTCAGCG
EST: ACAGGTGGTACATGGGCTCGGCCACGTGGCTCTGATGATGGGTATTCAAG TGATTCAGTGCTGAAGCATTCGTCGAGTGACTTCAAAAAGCTTGGTCAGCGEST: gi|29689435|gb|CB685710.1|CB685710
genomic: ACAGGTGGTACATGGGCTCGGCCACGTGGCTCTGATGATGGGTATTCAAGgtcagtggta ... aaatttgcagTGATTCAGTGCTGAAGCATTCGTCGAGTGACTTCAAAAAGCTTGGTCAGCG
EST: ACAGGTGGTACATGGGCTCGGCCACGTGGCTCTGATGATGGGTATTCAAG TGATTCAGTGCTGAAGCATTCGTCGAGTGACTTCAAAAAGCTTGGTCAGCG
genomic: ACAGGTGGTACATGGGCTCGGCCACGTGGCTCTGATGATGGGTATTCAAGgtcagtggta ... aaatttgcagTGATTCAGTGCTGAAGCATTCGTCGAGTGACTTCAAAAAGCTTGGTCAGCG
aaccactgtttgtcttccttcacgggcatataactagtatatggaaaatttgcagTGATTCAGTGCTGAAGCATTCGTCGAGTGACTTCAAAAAGCTTGGTCAGCGTATATTTGTGTTTGTCATTGGTGGCGCCACTCGGTCGGAG
atataac putative branch site (score: 13)
atataactagtatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttggaacaagagaagctattccacaccgtttgcatttgtgtacataaccactgtttgtcttccttcacgggcatataactagtatatggaaaatttgcagTGATTCAGTGCTGAAGCATTCGTCGAGTGACTTCAAAAAGCTTGGTCAGCGTATATTTGTGTTTGTCATTGGTGGCGCCACTCGGTCGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- -gaacaag
- - - - - - - - - -tccacac
- - - - - - - - - - - - - - -ttgcatt