1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
...aggcaaaaaatcaattcctaaactaggtattagtgtgttttgtgtgaaatccctgttacaccttttccttgcattctgagcctggaaatgtactgtacagGCGTGAAGAACTTCGACAACGAGATACACAGTTGAGGCAAACG
species | Oryza sativa |
transcript | LOC_Os10g10190.1 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: CCCTATATCATGGAAAAGCTGAGTGAAGAAAACATCGGTCTGTTCACAAG GCGTGAAGAACTTCGACAACGAGATACACAGTTGAGGCAAACGEST: gi|29626847|gb|CB631858.1|CB631858
genomic: CCCTATATCATGGAAAAGCTGAGTGAAGAAAACATCGGTCTGTTCACAAGgtaatgttga ... tactgtacagGCGTGAAGAACTTCGACAACGAGATACACAGTTGAGGCAAACG
EST: CCCTATATCATGGAAAAGCTGAGTGAAGAAAACATCGGTCTGTTCACAAG GCGTGAAGAACTTCGACAACGAGATACACAGTTGAGGCAAACGEST: gi|58695133|gb|CK083820.1|CK083820
genomic: CCCTATATCATGGAAAAGCTGAGTGAAGAAAACATCGGTCTGTTCACAAGgtaatgttga ... tactgtacagGCGTGAAGAACTTCGACAACGAGATACACAGTTGAGGCAAACG
EST: CCCTATATCATGGAAAAGCTGAGTGAAGAAAACATCGGTCTGTTCACAAG GCGTGAAGAACTTCGACAACGAGATACACAGTTGAGGCAAACGEST: gi|25803284|gb|CA759245.1|CA759245
genomic: CCCTATATCATGGAAAAGCTGAGTGAAGAAAACATCGGTCTGTTCACAAGgtaatgttga ... tactgtacagGCGTGAAGAACTTCGACAACGAGATACACAGTTGAGGCAAACG
EST: CCCTATATCATGGAAAAGCTGAGTGAAGAAAACATCGGTCTGTTCACAAG GCGTGAAGAACTTCGACAACGAGATACACAGTTGAGGCAAACGEST: gi|86841579|gb|CI336521.1|CI336521
genomic: CCCTATATCATGGAAAAGCTGAGTGAAGAAAACATCGGTCTGTTCACAAGgtaatgttga ... tactgtacagGCGTGAAGAACTTCGACAACGAGATACACAGTTGAGGCAAACG
EST: CCCTATATCATGGAAAAGCTGAGTGAAGAAAACATCGGTCTGTTCACAAG GCGTGAAGAACTTCGACAACGAGATACACAGTTGAGGCAAACG
genomic: CCCTATATCATGGAAAAGCTGAGTGAAGAAAACATCGGTCTGTTCACAAGgtaatgttga ... tactgtacagGCGTGAAGAACTTCGACAACGAGATACACAGTTGAGGCAAACG
gaaatccctgttacaccttttccttgcattctgagcctggaaatgtactgtacagGCGTGAAGAACTTCGACAACGAGATACACAGTTGAGGCAAACG
aaatgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aggcaaaaaatcaattcctaaactaggtattagtgtgttttgtgtgaaatccctgttacaccttttccttgcattctgagcctggaaatgtactgtacagGCGTGAAGAACTTCGACAACGAGATACACAGTTGAGGCAAACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- -caaaaaa
- - - - - - - - - - - - - - - - -tgtgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcattct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gagcctg