1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
gtacaatgttcaactactttagagctcttgctttcttacacttggatgattgaattgaaacagtaacaattggctcatggtttcaaatagGCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGTGAACCCATTGTTCCATCTGGCAAGCAG
species | Oryza sativa |
transcript | LOC_Os07g47290.3 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: TTCGCAAGCGCTACCAGAGTTTTNATAGTGAGATCNGTGCCTTGATTGAG GCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAANGTTCTGGAGTGGGGTEST: gi|15854754|gb|BI807566.1|BI807566
genomic: TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAGgtacaatgtt ... tttcaaatagGCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
EST: TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAG GCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGTEST: gi|88540647|gb|CI468708.1|CI468708
genomic: TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAGgtacaatgtt ... tttcaaatagGCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
EST: TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAG GCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGTEST: gi|88974071|gb|CI002733.1|CI002733
genomic: TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAGgtacaatgtt ... tttcaaatagGCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
EST: TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAG GCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGTEST: gi|89179716|gb|CI043995.1|CI043995
genomic: TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAGgtacaatgtt ... tttcaaatagGCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
EST: TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAG GCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGTEST: gi|38476165|gb|CF960298.1|CF960298
genomic: TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAGgtacaatgtt ... tttcaaatagGCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
EST: TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAG GCTGGGAAAGGAGACTTCGAGAGGCTAGAGAAGAAGGTTCTGGAGTGGGGTEST: gi|89194258|gb|CI116695.1|CI116695
genomic: TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAGgtacaatgtt ... tttcaaatagGCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
EST: TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAG GCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGTEST: gi|88828748|gb|CI073618.1|CI073618
genomic: TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAGgtacaatgtt ... tttcaaatagGCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
EST: TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAG GCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGTEST: gi|88514668|gb|CI442174.1|CI442174
genomic: TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAGgtacaatgtt ... tttcaaatagGCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
EST: TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAG GCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGTEST: gi|29688817|gb|CB685092.1|CB685092
genomic: TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAGgtacaatgtt ... tttcaaatagGCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
EST: TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAG GCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGTEST: gi|163927225|gb|EG710263.1|EG710263
genomic: TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAGgtacaatgtt ... tttcaaatagGCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
EST: TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAG GCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGTEST: gi|88985909|gb|CI033238.1|CI033238
genomic: TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAGgtacaatgtt ... tttcaaatagGCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
EST: TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAG GCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGTEST: gi|88506732|gb|CI434238.1|CI434238
genomic: TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAGgtacaatgtt ... tttcaaatagGCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
EST: TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAG GCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGTEST: gi|12622806|gb|AU173019.1|AU173019
genomic: TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAGgtacaatgtt ... tttcaaatagGCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
EST: AGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAG GCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGTEST: gi|218483389|gb|FG947207.1|FG947207
genomic: AGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAGgtacaatgtt ... tttcaaatagGCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
EST: TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAG GCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGTEST: gi|88840977|gb|CI000939.1|CI000939
genomic: TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAGgtacaatgtt ... tttcaaatagGCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
EST: TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAG GCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGTEST: gi|58031342|gb|CX728885.1|CX728885
genomic: TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAGgtacaatgtt ... tttcaaatagGCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
EST: TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAG GCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGTEST: gi|88537783|gb|CI466758.1|CI466758
genomic: TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAGgtacaatgtt ... tttcaaatagGCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
EST: TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAG GCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGTEST: gi|88475673|gb|CI412944.1|CI412944
genomic: TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAGgtacaatgtt ... tttcaaatagGCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
EST: TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAG GCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGTEST: gi|88995441|gb|CI022764.1|CI022764
genomic: TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAGgtacaatgtt ... tttcaaatagGCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
EST: TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAG GCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGTEST: gi|88437040|gb|CI523990.1|CI523990
genomic: TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAGgtacaatgtt ... tttcaaatagGCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
EST: GAGTTTTGATAGTGAGATCGGTGCCTTGATTGAG GCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGTEST: gi|88535496|gb|CI464300.1|CI464300
genomic: GAGTTTTGATAGTGAGATCGGTGCCTTGATTGAGgtacaatgtt ... tttcaaatagGCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
EST: TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAG GCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGTEST: gi|313080767|gb|HO213564.1|HO213564
genomic: TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAGgtacaatgtt ... tttcaaatagGCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
EST: TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAG GCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGTEST: gi|88504210|gb|CI431716.1|CI431716
genomic: TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAGgtacaatgtt ... tttcaaatagGCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
EST: TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAG GCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
genomic: TTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAGgtacaatgtt ... tttcaaatagGCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGT
ttacacttggatgattgaattgaaacagtaacaattggctcatggtttcaaatagGCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGTGAACCCATTGTTCCATCTGGCAAGCAG
cagtaac putative branch site (score: 2)
tttcaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacaatgttcaactactttagagctcttgctttcttacacttggatgattgaattgaaacagtaacaattggctcatggtttcaaatagGCTGGGAAAGGAGACTTCGAGACACTAGAGAAGAAGGTTCTGGAGTGGGGTGAACCCATTGTTCCATCTGGCAAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG