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...tccactaaaatctactgctgagtgttgagattattttcttttttatacatcagatttgtcttgatatttccgtgtgtaaaccttaaaataatttatgcagCGTGAGAGGGTTCTATGTGATCATGACATACTTGCCAAAACGAAGGATACTCTTGTTTTCTCCTACCTTACACATGGAGCAAGTTCAGAATCTGCCACTA
species | Oryza sativa |
transcript | LOC_Os02g52960.1 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: AAAAATTGCGACTCTTGTGCGAGAGGATAATTAAGAGAGAAAAGGTGAAG CGTGAGAGGGTTCTATGTGATCATGACATACTTGCCAAAACGAAGGATACTEST: gi|58690809|gb|CK079496.1|CK079496
genomic: AAAAATTGCGACTCTTGTGCGAGAGGATAATTAAGAGAGAAAAGGTGAAGgtatgtgtgg ... atttatgcagCGTGAGAGGGTTCTATGTGATCATGACATACTTGCCAAAACGAAGGATACT
EST: AAAAATTGCGACTCTTGTGCGAGAGGATAATTAAGAGAGAAAAGGTGAAG CGTGAGAGGGTTCTATGTGEST: gi|58666060|gb|CK054746.1|CK054746
genomic: AAAAATTGCGACTCTTGTGCGAGAGGATAATTAAGAGAGAAAAGGTGAAGgtatgtgtgg ... atttatgcagCGTGAGAGGGTTCTATGTG
EST: AAAAATTGCGACTCTTGTGCGAGAGGATAATTAAGAGAGAAAAGGTGAAG CGTGAGAGGGTTCTATGTGATCATGACATACTTGCCAAAACGAAGGATACT
genomic: AAAAATTGCGACTCTTGTGCGAGAGGATAATTAAGAGAGAAAAGGTGAAGgtatgtgtgg ... atttatgcagCGTGAGAGGGTTCTATGTGATCATGACATACTTGCCAAAACGAAGGATACT
tacatcagatttgtcttgatatttccgtgtgtaaaccttaaaataatttatgcagCGTGAGAGGGTTCTATGTGATCATGACATACTTGCCAAAACGAAGGATACTCTTGTTTTCTCCTACCTTACACATGGAGCAAGTTCAGAATCTGCCACTA
tcttgat putative branch site (score: 22)
tgtaaaccttaaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tccactaaaatctactgctgagtgttgagattattttcttttttatacatcagatttgtcttgatatttccgtgtgtaaaccttaaaataatttatgcagCGTGAGAGGGTTCTATGTGATCATGACATACTTGCCAAAACGAAGGATACTCTTGTTTTCTCCTACCTTACACATGGAGCAAGTTCAGAATCTGCCACTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- -actaaaa
- - - - - - -actgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccgtgtg