1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
...attggcatagtctccaaagcgaggatgtactaatgcatatattttgttttgccttcatttgactaaaatatacgatagttaacttgtaccttttatacagGACTTGATTGAGAAGCTTAGCAAGGGAGAATTACCAAAAGACGAATACTATTGCATGAACGACCCTAGCCCAAGTTTCCACGGTCTGCCAATGAGCAGCT
species | Oryza sativa |
transcript | LOC_Os02g25580.1 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: CTGGGGAAGAATCTACATGGGCACTTTCCCGATTTTATCCTGTTCTAGAG GACTTGATTGAGAAGCTTAGCAAGGGAGAATTACCAAAAGACGAATACTATEST: gi|38481465|gb|CF965554.1|CF965554
genomic: CTGGGGAAGAATCTACATGGGCACTTTCCCGATTTTATCCTGTTCTAGAGgtataaatat ... ttttatacagGACTTGATTGAGAAGCTTAGCAAGGGAGAATTACCAAAAGACGAATACTAT
EST: CTGGGGAAGAATCTACATGGGCACTTTCCCGATTTTATCCTGTTCTAGAG GACTTGATTGAGAAGCTTAGCAAGGGAGAATTACCAAAAGACGAATACTATEST: gi|218485563|gb|FG949368.1|FG949368
genomic: CTGGGGAAGAATCTACATGGGCACTTTCCCGATTTTATCCTGTTCTAGAGgtataaatat ... ttttatacagGACTTGATTGAGAAGCTTAGCAAGGGAGAATTACCAAAAGACGAATACTAT
EST: CTGGGGAAGAATCTACATGGGCACTTACCCGATTTTATCCTGTTCTAGAG GACTTGATTGAGAAGCTTEST: gi|29626796|gb|CB631807.1|CB631807
genomic: CTGGGGAAGAATCTACATGGGCACTTTCCCGATTTTATCCTGTTCTAGAGgtataaatat ... ttttatacagGACTTGATTGAGAAGCTT
EST: CTGGGGAAGAATCTACATGGGCACTTTCCCGATTTTATCCTGTTCTAGAG GACTTGATTGAGAAGCTTAGCAAGGGAGAATTACCAAAAGACGAATACTATEST: gi|29626758|gb|CB631769.1|CB631769
genomic: CTGGGGAAGAATCTACATGGGCACTTTCCCGATTTTATCCTGTTCTAGAGgtataaatat ... ttttatacagGACTTGATTGAGAAGCTTAGCAAGGGAGAATTACCAAAAGACGAATACTAT
EST: ACTTTCCCGATTTTATCCTGTTCTAGAG GACTTGATTGAGAAGCTTAGCAAGGGAGAATTACCAAAAGACGAATACTATEST: gi|29689435|gb|CB685710.1|CB685710
genomic: ACTTTCCCGATTTTATCCTGTTCTAGAGgtataaatat ... ttttatacagGACTTGATTGAGAAGCTTAGCAAGGGAGAATTACCAAAAGACGAATACTAT
EST: CTGGGGAAGAATCTACATGGGCACTTTCCCGATTTTATCCTGTTCTAGAG GACTTGATTGAGAAGCTTAGCAAGGGAGAATTACCAAAAGACGAATACTATEST: gi|86831700|gb|CI301550.1|CI301550
genomic: CTGGGGAAGAATCTACATGGGCACTTTCCCGATTTTATCCTGTTCTAGAGgtataaatat ... ttttatacagGACTTGATTGAGAAGCTTAGCAAGGGAGAATTACCAAAAGACGAATACTAT
EST: CTGGGGAAGAATCTACATGGGCACTTTCCCGATTTTATCCTGTTCTAGAG GACTTGATTGAGAAGCTTAGCAAGGGAGAATTACCAAAAGACGAATACTATEST: gi|66914840|gb|CX101688.1|CX101688
genomic: CTGGGGAAGAATCTACATGGGCACTTTCCCGATTTTATCCTGTTCTAGAGgtataaatat ... ttttatacagGACTTGATTGAGAAGCTTAGCAAGGGAGAATTACCAAAAGACGAATACTAT
EST: CTGGGGAAGAATCTACATGGGCACTTTCCCGATTTTATCCTGTTCTAAAG GACTTGATTGAGAAGCTTAGCAAGGGAGAATTACCAAAAGACGAATACTAT
genomic: CTGGGGAAGAATCTACATGGGCACTTTCCCGATTTTATCCTGTTCTAGAGgtataaatat ... ttttatacagGACTTGATTGAGAAGCTTAGCAAGGGAGAATTACCAAAAGACGAATACTAT
gttttgccttcatttgactaaaatatacgatagttaacttgtaccttttatacagGACTTGATTGAGAAGCTTAGCAAGGGAGAATTACCAAAAGACGAATACTATTGCATGAACGACCCTAGCCCAAGTTTCCACGGTCTGCCAATGAGCAGCT
tacctttt CT-rich tract
atttgactaaaatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attggcatagtctccaaagcgaggatgtactaatgcatatattttgttttgccttcatttgactaaaatatacgatagttaacttgtaccttttatacagGACTTGATTGAGAAGCTTAGCAAGGGAGAATTACCAAAAGACGAATACTATTGCATGAACGACCCTAGCCCAAGTTTCCACGGTCTGCCAATGAGCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- tggcata
- - - - - - - - - - - -gatgtac
- - - - - - - - - - - - - - - - atgcata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -actaaaa