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...ttcattttatggtcggaaataacctccatatttacttgctaccattctcttgtatgtgttattctgtttgtgattatatcttattacttatattgcatagGTGGGGCAACTTAGGGAGGTATCTAACAAGGCGCACAATGCTGAGTTGAAGTTGTTTCTGGAAGTAGAGACTGGAGTG
species | Oryza sativa |
transcript | LOC_Os12g30540.1 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: ATACATACCGACCGAATCGTCCACTGGGCCCTCATGAAGAATCACAATCA GTGGGGCAACTTAGGGAGGTCTCTAACAAGGCGCACAATGCTGAGTTGAAGEST: gi|29614412|gb|CB619425.1|CB619425
genomic: ATACATACCGACCGAATCGTCCACTGGGCCCTCATGAAGAATCACAATCAgtgagtcata ... tattgcatagGTGGGGCAACTTAGGGAGGTATCTAACAAGGCGCACAATGCTGAGTTGAAG
EST: ATACATACCGACCGAATCGTCCACTGGGCCCTCATGAAGAATCACAATCA GTGGGGCAACTTAGGGAGGTCTCTAACAAGGCGCACAATGCTGAGTTGAAG
genomic: ATACATACCGACCGAATCGTCCACTGGGCCCTCATGAAGAATCACAATCAgtgagtcata ... tattgcatagGTGGGGCAACTTAGGGAGGTATCTAACAAGGCGCACAATGCTGAGTTGAAG
tctcttgtatgtgttattctgtttgtgattatatcttattacttatattgcatagGTGGGGCAACTTAGGGAGGTATCTAACAAGGCGCACAATGCTGAGTTGAAGTTGTTTCTGGAAGTAGAGACTGGAGTG
tttgtgattatatctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcattttatggtcggaaataacctccatatttacttgctaccattctcttgtatgtgttattctgtttgtgattatatcttattacttatattgcatagGTGGGGCAACTTAGGGAGGTATCTAACAAGGCGCACAATGCTGAGTTGAAGTTGTTTCTGGAAGTAGAGACTGGAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - -acctcca
- - - - - - - - - - - - - - - - tacttgc
- - - - - - - - - - - - - - - - - - - - - - - - - -gtatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgtttg