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gtaactagtattttgtgttcattcctcatcatttttttagcgcaacagctatcaattgaacacctatcaattttgttttctcggatctttgaataaactaaccatcttttgtttgcctataattagATTGGTCTTGCCATGTCTCCTTTGAGCAACAACTCATTGTTTATTGATTATCACCGAAACCCTTTCCCAACATTTTTCCTAAGAGGCCTTAACGTTTCTC
species | Oryza sativa |
transcript | LOC_Os07g49270.1 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: TTAATTTAAAGAAGTCCCCTGTCCTCCAGTATCTGTATTACCTAGCTCAG ATTGGTCTTGCCATGTCTCCTTTGAGCAACAACTCATTGTTTATTGATTATEST: gi|29671781|gb|CB668056.1|CB668056
genomic: TTAATTTAAAGAAGTCCCCTGTCCTCCAGTATCTGTATTACCTAGCTCAGgtaactagta ... ctataattagATTGGTCTTGCCATGTCTCCTTTGAGCAACAACTCATTGTTTATTGATTAT
EST: TTAATTTAAAGAAGTCCCCTGTCCTCCAGTATCTGTATTACCTAGCTCAG ATTGGTCTTGCCATGTCTCCTTTGAGCAACAACTCATTGTTTATTGATTATEST: gi|29671780|gb|CB668055.1|CB668055
genomic: TTAATTTAAAGAAGTCCCCTGTCCTCCAGTATCTGTATTACCTAGCTCAGgtaactagta ... ctataattagATTGGTCTTGCCATGTCTCCTTTGAGCAACAACTCATTGTTTATTGATTAT
EST: TTAATTTAAAGAAGTCCCCTGTCCTCCAGTATCTGTATTACCTAGCTCAG ATTGGTCTTGCCATGTCTCCTTTGAGCAACAACTCATTGTTTATTGATTATEST: gi|33675288|gb|CF303527.1|CF303527
genomic: TTAATTTAAAGAAGTCCCCTGTCCTCCAGTATCTGTATTACCTAGCTCAGgtaactagta ... ctataattagATTGGTCTTGCCATGTCTCCTTTGAGCAACAACTCATTGTTTATTGATTAT
EST: TTAATTTAAAGAAGTCCCCTGTCCTCCAGTATCTGTATTACCTAGCTCAG ATTGGTCTTGCCATGTCTCCTTTGAGCAACAACTCATTGTTTATTGATTATEST: gi|29663749|gb|CB660024.1|CB660024
genomic: TTAATTTAAAGAAGTCCCCTGTCCTCCAGTATCTGTATTACCTAGCTCAGgtaactagta ... ctataattagATTGGTCTTGCCATGTCTCCTTTGAGCAACAACTCATTGTTTATTGATTAT
EST: TTAATTTAAAGAAGTCCCCTGTCCTCCAGTATCTGTATTACCTAGCTCAG ATTGGTCTTGCCATGTCTCCTTTGAGCAACAACTCATTGTTTATTGATTATEST: gi|218478545|gb|FG960299.1|FG960299
genomic: TTAATTTAAAGAAGTCCCCTGTCCTCCAGTATCTGTATTACCTAGCTCAGgtaactagta ... ctataattagATTGGTCTTGCCATGTCTCCTTTGAGCAACAACTCATTGTTTATTGATTAT
EST: TACTTTAAAGAAGTCCCCTGTCCTCCAGTATCTGTATTA-CTCA-CTCAG ATTGGTCTTGCCATGTCTCCTTTGAGCAACAACTCATTGTTTATTGATTAEST: gi|58593125|gb|CF991433.1|CF991433
genomic: TAATTTAAAGAAGTCCCCTGTCCTCCAGTATCTGTATTACCT-AGCTCAGgtaactagta ... ctataattagATTGGTCTTGCCATGTCTCCTTTGAGCAACAACTCATTGTTTATTGATTA
EST: TTAATTTAAAGAAGTCCCCTGTCCTCCAGTATCTGTATTACCTAGCTCAG ATTGGTCTTGCCATGTCTCCTTTGAGCAACAACTCATTGTTTATTGATTATEST: gi|163926592|gb|EG713608.1|EG713608
genomic: TTAATTTAAAGAAGTCCCCTGTCCTCCAGTATCTGTATTACCTAGCTCAGgtaactagta ... ctataattagATTGGTCTTGCCATGTCTCCTTTGAGCAACAACTCATTGTTTATTGATTAT
EST: TTAATTTAAAGAAGTCCCCTGTCCTCCAGTATCTGTATTACCTAGCTCAG ATTGGTCTTGCCATGTCTCCTTTGAGCAACAACTCATTGTTTATTGATTAT
genomic: TTAATTTAAAGAAGTCCCCTGTCCTCCAGTATCTGTATTACCTAGCTCAGgtaactagta ... ctataattagATTGGTCTTGCCATGTCTCCTTTGAGCAACAACTCATTGTTTATTGATTAT
tttgttttctcggatctttgaataaactaaccatcttttgtttgcctataattagATTGGTCTTGCCATGTCTCCTTTGAGCAACAACTCATTGTTTATTGATTATCACCGAAACCCTTTCCCAACATTTTTCCTAAGAGGCCTTAACGTTTCTC
aactaac putative branch site (score: 24)
tcttttgtttgcct putative PPT
tttgaataaactaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaactagtattttgtgttcattcctcatcatttttttagcgcaacagctatcaattgaacacctatcaattttgttttctcggatctttgaataaactaaccatcttttgtttgcctataattagATTGGTCTTGCCATGTCTCCTTTGAGCAACAACTCATTGTTTATTGATTATCACCGAAACCCTTTCCCAACATTTTTCCTAAGAGGCCTTAACGTTTCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG