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gtaactggaacattacagccttctaaagtttttattcagggatctagatgtaatctttttatctctttctgctgttagGATGGTTCCCTGGATGAGCTTGTTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAG
species | Oryza sativa |
transcript | LOC_Os07g47290.3 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: GAATGGACACCCTAGCCC-CGGCCTTCGGAATGTTGTCAAGCTGATCGAG GATGGTTCCCTGGATGAGCTTGTTCGCAAGCGCTACCAGAGTTTTGATAGTEST: gi|88974071|gb|CI002733.1|CI002733
genomic: GAATGGACACCCTAGCCCGCGGCCTTCGGAATGTTGTCAAGCTGATCGAGgtaactggaa ... ctgctgttagGATGGTTCCCTGGATGAGCTTGTTCGCAAGCGCTACCAGAGTTTTGATAGT
EST: GAATGGACACCCTAGCCCGCGGCCTTCGGAATGTTGTCAAGCTGATCGAG GATGGTTCCCTGGATGAGCTTGTTCGCAAGCGCTACCAGAGTTTTGATAGTEST: gi|89179716|gb|CI043995.1|CI043995
genomic: GAATGGACACCCTAGCCCGCGGCCTTCGGAATGTTGTCAAGCTGATCGAGgtaactggaa ... ctgctgttagGATGGTTCCCTGGATGAGCTTGTTCGCAAGCGCTACCAGAGTTTTGATAGT
EST: GAATGGACACCCTAGCCCGCGGCCTTCGGAATGTTGTCAAGCTGATCGAG GATGGTTCCCTGGATGAGCTTGTTCGCAAGCGCTACCAGAGTTTTGATAGTEST: gi|38476165|gb|CF960298.1|CF960298
genomic: GAATGGACACCCTAGCCCGCGGCCTTCGGAATGTTGTCAAGCTGATCGAGgtaactggaa ... ctgctgttagGATGGTTCCCTGGATGAGCTTGTTCGCAAGCGCTACCAGAGTTTTGATAGT
EST: GAATGGACACCCTAGCCCGCGGCCTTCGGAATGTTGTCAAGCTGATCGAG GATGGTTCCCTGNGATGAGCTTGTTCGCAAGCGCTACCAGAGTTTTGATAGEST: gi|89194258|gb|CI116695.1|CI116695
genomic: GAATGGACACCCTAGCCCGCGGCCTTCGGAATGTTGTCAAGCTGATCGAGgtaactggaa ... ctgctgttagGATGGTTCCCTG-GATGAGCTTGTTCGCAAGCGCTACCAGAGTTTTGATAG
EST: GAATGGACACCCTAGCCCGCGGCCTTCGGAATGTTGTCAAGCTGATCGAG GATGGTTCCCTGGATGAGCTTGTTCGCAAGCGCTACCAGAGTTTTGATAGTEST: gi|88828748|gb|CI073618.1|CI073618
genomic: GAATGGACACCCTAGCCCGCGGCCTTCGGAATGTTGTCAAGCTGATCGAGgtaactggaa ... ctgctgttagGATGGTTCCCTGGATGAGCTTGTTCGCAAGCGCTACCAGAGTTTTGATAGT
EST: GAATGGACACCCTAGCCCGCGGCCTTCGGAATGTTGTCAAGCTGATCGAG GATGGTTCCCTGGATGAGCTTGTTCGCAAGCGCTACCAGAGTTTTGATAGTEST: gi|88514668|gb|CI442174.1|CI442174
genomic: GAATGGACACCCTAGCCCGCGGCCTTCGGAATGTTGTCAAGCTGATCGAGgtaactggaa ... ctgctgttagGATGGTTCCCTGGATGAGCTTGTTCGCAAGCGCTACCAGAGTTTTGATAGT
EST: AAGCTGATCGAG GATGGTTCCCTGGATGAGCTTGTTCGCAAGCGCTACCAGAGTTTTGATAGTEST: gi|29688817|gb|CB685092.1|CB685092
genomic: AAGCTGATCGAGgtaactggaa ... ctgctgttagGATGGTTCCCTGGATGAGCTTGTTCGCAAGCGCTACCAGAGTTTTGATAGT
EST: GAATGGACACCCTAGCCCGCGGCCTTCGGAATGTTGTCAAGCTGATCGAG GATGGTTCCCTGGAGGAGCTTGTTCGCAAGCGCTACCAGAGTTTTGATAGTEST: gi|163927225|gb|EG710263.1|EG710263
genomic: GAATGGACACCCTAGCCCGCGGCCTTCGGAATGTTGTCAAGCTGATCGAGgtaactggaa ... ctgctgttagGATGGTTCCCTGGATGAGCTTGTTCGCAAGCGCTACCAGAGTTTTGATAGT
EST: GAATGGACACCCTAGCCCGCGGCCTTCGGAATGTTGTCAAGCTGATCGAG GATGGTTCCCTGGATGAGCTTGTTCGCAAGCGCTACCAGAGTTTTGATAGTEST: gi|88985909|gb|CI033238.1|CI033238
genomic: GAATGGACACCCTAGCCCGCGGCCTTCGGAATGTTGTCAAGCTGATCGAGgtaactggaa ... ctgctgttagGATGGTTCCCTGGATGAGCTTGTTCGCAAGCGCTACCAGAGTTTTGATAGT
EST: GAATGGACACCCTAGCCCGCGGCCTTCGGAATGTTGTCAAGCTGATCGAG GATGGTTCCCTGGATGAGCTTGTTCGCAAGCGCTACCAGAGTTTTGATAGTEST: gi|88506732|gb|CI434238.1|CI434238
genomic: GAATGGACACCCTAGCCCGCGGCCTTCGGAATGTTGTCAAGCTGATCGAGgtaactggaa ... ctgctgttagGATGGTTCCCTGGATGAGCTTGTTCGCAAGCGCTACCAGAGTTTTGATAGT
EST: CCGCGGCCTTCGGAATGTTGTCAAGCTGATCGAG GATGGTTCCCTGGATGAGCTTGTTCGCAAGCGCTACCAGAGTTTTGATAGTEST: gi|218483389|gb|FG947207.1|FG947207
genomic: CCGCGGCCTTCGGAATGTTGTCAAGCTGATCGAGgtaactggaa ... ctgctgttagGATGGTTCCCTGGATGAGCTTGTTCGCAAGCGCTACCAGAGTTTTGATAGT
EST: GAATGGACACCCTAGCCCGCGGCCTTCGGAATGTTGTCAAGCTGATCGAG GATGGTTCCCTGGATGAGCTTGTTCGCAAGCGCTACCAGAGTTTTGATAGTEST: gi|88840977|gb|CI000939.1|CI000939
genomic: GAATGGACACCCTAGCCCGCGGCCTTCGGAATGTTGTCAAGCTGATCGAGgtaactggaa ... ctgctgttagGATGGTTCCCTGGATGAGCTTGTTCGCAAGCGCTACCAGAGTTTTGATAGT
EST: GAATGGACACCCTAGCCCGCGGCCTTCGGAATGTTGTCAAGCTGATCGAG GATGGTTCTCTGGATGAGCTTGTTCGCAAGCGCTACCAGAGTTTTGATAGTEST: gi|58031342|gb|CX728885.1|CX728885
genomic: GAATGGACACCCTAGCCCGCGGCCTTCGGAATGTTGTCAAGCTGATCGAGgtaactggaa ... ctgctgttagGATGGTTCCCTGGATGAGCTTGTTCGCAAGCGCTACCAGAGTTTTGATAGT
EST: GAATGGACACCCTAGCCCGCGGCCTTCGGAATGTTGTCAAGCTGATCGAG GATGGTTCCCTGGAGGAGCTTGTTCGCAAGCGCTACCAGAGTTTTGATAGTEST: gi|88537783|gb|CI466758.1|CI466758
genomic: GAATGGACACCCTAGCCCGCGGCCTTCGGAATGTTGTCAAGCTGATCGAGgtaactggaa ... ctgctgttagGATGGTTCCCTGGATGAGCTTGTTCGCAAGCGCTACCAGAGTTTTGATAGT
EST: AATGGACACCCTAGCCCGCGGCCTTCGGAATGTTTTCAAGCTGATCGAG GATGGTTCCCTGGATGAGCTTGTTCGCAAGCGCTACCAGAGTTTTGATAGTEST: gi|88475673|gb|CI412944.1|CI412944
genomic: AATGGACACCCTAGCCCGCGGCCTTCGGAATGTTGTCAAGCTGATCGAGgtaactggaa ... ctgctgttagGATGGTTCCCTGGATGAGCTTGTTCGCAAGCGCTACCAGAGTTTTGATAGT
EST: AGCTGATCGAG GATGGTTCCCTGGATGAGCTTGTTCGCAAGCGCTACCAGAGTTTTGATAGTEST: gi|88995441|gb|CI022764.1|CI022764
genomic: AGCTGATCGAGgtaactggaa ... ctgctgttagGATGGTTCCCTGGATGAGCTTGTTCGCAAGCGCTACCAGAGTTTTGATAGT
EST: GAATGGACACCCTAGCCCGCGGCCTTCGGAATGTTGTCAAGCTGATCGAG GATGGTTCCCTGGATGAGCTTGTTCGCAAGCGCTACCAGAGTTTTGATAGTEST: gi|313080767|gb|HO213564.1|HO213564
genomic: GAATGGACACCCTAGCCCGCGGCCTTCGGAATGTTGTCAAGCTGATCGAGgtaactggaa ... ctgctgttagGATGGTTCCCTGGATGAGCTTGTTCGCAAGCGCTACCAGAGTTTTGATAGT
EST: CCCGCGGCCTTCGGAATGTTGTCAAGCTGATCGAG GATGGTTCCCTGGATGAGCTTGTTCGCAAGCGCTACCAGAGTTTTGATAGTEST: gi|88504210|gb|CI431716.1|CI431716
genomic: CCCGCGGCCTTCGGAATGTTGTCAAGCTGATCGAGgtaactggaa ... ctgctgttagGATGGTTCCCTGGATGAGCTTGTTCGCAAGCGCTACCAGAGTTTTGATAGT
EST: GGACACCCTAGCCCNCGGCCTTCGGAATGTTGTCAAGCTGATCGAG GATGGTTCCCTGGATGAGCTTGTTCGCAAGCGCTACCAGAGTTTTGATAGT
genomic: GGACACCCTAGCCCGCGGCCTTCGGAATGTTGTCAAGCTGATCGAGgtaactggaa ... ctgctgttagGATGGTTCCCTGGATGAGCTTGTTCGCAAGCGCTACCAGAGTTTTGATAGT
taaagtttttattcagggatctagatgtaatctttttatctctttctgctgttagGATGGTTCCCTGGATGAGCTTGTTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAG
ttctaaa putative branch site (score: 2)
tctttttatctctttc putative PPT
atgtaatctttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaactggaacattacagccttctaaagtttttattcagggatctagatgtaatctttttatctctttctgctgttagGATGGTTCCCTGGATGAGCTTGTTCGCAAGCGCTACCAGAGTTTTGATAGTGAGATCGGTGCCTTGATTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC