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gtcagatcctactgccttactattatctaacattatggagcactacaaatgattatgatatttactgttgctatgcttgcttgctcaccagATGAGAATACAGCTTACCCGCCAATCACAGCTTTCCAGAGTGCAGCTTTGAAGATCACTTTCAATTTTAAGAAGCAGTCTGGAAAACCTCAGGAGACTAC
species | Oryza sativa |
transcript | LOC_Os06g07090.1 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: CCAAGTTGTGGATCTTCTTGATGGTTNGTCCTCAAGCACATCTCTTTCTG ATGAGAATACAGCTTACCCGCCAATCACAGCTTTNCAGAGTGCAGCTTTGAEST: gi|86430463|gb|CI082886.1|CI082886
genomic: CCAAGTTGTGGATCTTCTTGATGGTTTGTCCTCAAGCACATCTCTTTCTGgtcagatcct ... tgctcaccagATGAGAATACAGCTTACCCGCCAATCACAGCTTTCCAGAGTGCAGCTTTGA
EST: CCAAGTTGTGGATCTTCTTGATGGTTTGTCCTCAAGCACATCTCTTTCTG ATGAGAATACAGCTTACCCGCCAATCACAGCTTTCCAGAGTGCAGCTTTGA
genomic: CCAAGTTGTGGATCTTCTTGATGGTTTGTCCTCAAGCACATCTCTTTCTGgtcagatcct ... tgctcaccagATGAGAATACAGCTTACCCGCCAATCACAGCTTTCCAGAGTGCAGCTTTGA
ggagcactacaaatgattatgatatttactgttgctatgcttgcttgctcaccagATGAGAATACAGCTTACCCGCCAATCACAGCTTTCCAGAGTGCAGCTTTGAAGATCACTTTCAATTTTAAGAAGCAGTCTGGAAAACCTCAGGAGACTAC
cttgctt CT-rich tract
tacaaatgattatgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagatcctactgccttactattatctaacattatggagcactacaaatgattatgatatttactgttgctatgcttgcttgctcaccagATGAGAATACAGCTTACCCGCCAATCACAGCTTTCCAGAGTGCAGCTTTGAAGATCACTTTCAATTTTAAGAAGCAGTCTGGAAAACCTCAGGAGACTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA