1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
gtatagatgtgtttacataatttagtgctcctatcttttgaacagattcattgagtgaaaccaagtattaataatgtttactgttaacaatcggcgatctatttctatttcattaaagatactgatttgccattggacttattatgagatcaaagattgctaatctgcatgtgttattcctgctgtagGTATTATATACCGTGATCTGAAGCCAGAAAACATTTTGCTCCAAGCAGATGGGCACATTGTACTGACTGATTTTGATCTTTCATTTTTGACGACTTCAAA
species | Oryza sativa |
transcript | LOC_Os04g23890.4 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: GTTTTATGCTGCAGAGGTTGTAATTGGTCTCGAGTACCTTCATTGCCTAG GTATTATATACCGTGATCTGAAGCCAGAAAACATTTTGCTCCAAGCAGATGEST: gi|33799059|gb|CF325389.1|CF325389
genomic: GTTTTATGCTGCAGAGGTTGTAATTGGTCTCGAGTACCTTCATTGCCTAGgtatagatgt ... cctgctgtagGTATTATATACCGTGATCTGAAGCCAGAAAACATTTTGCTCCAAGCAGATG
EST: GTTTTATGCTGCAGAGGTTGTAATTGGTCTCGAGTACCTTCATTGCCTAG GTATTATATACCGTGATCTGAAGCCAGAAAACATTTTGCTCCAAGCAGATGEST: gi|38470322|gb|CF954453.1|CF954453
genomic: GTTTTATGCTGCAGAGGTTGTAATTGGTCTCGAGTACCTTCATTGCCTAGgtatagatgt ... cctgctgtagGTATTATATACCGTGATCTGAAGCCAGAAAACATTTTGCTCCAAGCAGATG
EST: GTTTTATGCTGCAGAGGTTGTAATTGGTCTCGAGTACCTTCATTGCCTAG GTATTATATACCGTGATCTGAAGCCAGAAAACATTTTGCTCCAAGCAGATGEST: gi|88306572|gb|CI671324.1|CI671324
genomic: GTTTTATGCTGCAGAGGTTGTAATTGGTCTCGAGTACCTTCATTGCCTAGgtatagatgt ... cctgctgtagGTATTATATACCGTGATCTGAAGCCAGAAAACATTTTGCTCCAAGCAGATG
EST: GTTTTATGCTGCAGAGGTTGTAATTGGTCTCGAGTACCTTCATTGCCTAG GTATTATATACCGTGATCTGAAGCCAGAAAACATTTTGCTCCAAGCAGATGEST: gi|88578420|gb|CI687351.1|CI687351
genomic: GTTTTATGCTGCAGAGGTTGTAATTGGTCTCGAGTACCTTCATTGCCTAGgtatagatgt ... cctgctgtagGTATTATATACCGTGATCTGAAGCCAGAAAACATTTTGCTCCAAGCAGATG
EST: GTTTTATGCTGCAGAGGTTGTAATTGGTCTCGAGTACCTTCATTGCCTAG GTATTATATACCGTGATCTGAAGCCAGAAAACATTTTGCTCCAAGCAGATGEST: gi|88580457|gb|CI697388.1|CI697388
genomic: GTTTTATGCTGCAGAGGTTGTAATTGGTCTCGAGTACCTTCATTGCCTAGgtatagatgt ... cctgctgtagGTATTATATACCGTGATCTGAAGCCAGAAAACATTTTGCTCCAAGCAGATG
EST: GTTTCATGCTGCAGAGGTTGTAATTGGTCTCGAGTACCTTCATTGCCTAG GTATTATATACCGTGATCTGAAGCCAGAAAACATTTTGCTCCAAGCAGATGEST: gi|29684157|gb|CB680432.1|CB680432
genomic: GTTTTATGCTGCAGAGGTTGTAATTGGTCTCGAGTACCTTCATTGCCTAGgtatagatgt ... cctgctgtagGTATTATATACCGTGATCTGAAGCCAGAAAACATTTTGCTCCAAGCAGATG
EST: GTTTTATGCTGCAGAGGTTGTAATTGGTCTCGAGTACCTTCATTGCCTAG GTATTATATACCGTGATCTGAAGCCAGAAAACATTTTGCTCCAAGCAGATGEST: gi|33381050|gb|CF196393.1|CF196393
genomic: GTTTTATGCTGCAGAGGTTGTAATTGGTCTCGAGTACCTTCATTGCCTAGgtatagatgt ... cctgctgtagGTATTATATACCGTGATCTGAAGCCAGAAAACATTTTGCTCCAAGCAGATG
EST: CTTCATTGCCTAG GTATTATATACCGTGATCTGAAGCCAGAAAACATTTTGCTCCAAGCAGATG
genomic: CTTCATTGCCTAGgtatagatgt ... cctgctgtagGTATTATATACCGTGATCTGAAGCCAGAAAACATTTTGCTCCAAGCAGATG
tggacttattatgagatcaaagattgctaatctgcatgtgttattcctgctgtagGTATTATATACCGTGATCTGAAGCCAGAAAACATTTTGCTCCAAGCAGATGGGCACATTGTACTGACTGATTTTGATCTTTCATTTTTGACGACTTCAAA
tgctaat putative branch site (score: 2)
ttattcct putative PPT
ttattatga TA-rich tract