1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
...cactatgtgattatcaagttgaacaaacttcttttctggaaaaatcagaagagtcatatttgctgatgctaatatttttcatgttggatgaaattaacagGTCATGGATCTTGTGGTAAAAGAGAGCCTGGTGTTACATGAACGTCGCATTAGTTTATCAGAATTTCATGCTGCAGACGAG
species | Oryza sativa |
transcript | LOC_Os03g24460.2 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: TGTTGACACCTCATGCTGAGTACTGCCTTCCAGGCATTACGCGTGCNACT GTCATGGATCTTGTGGTAAAAGAGAGCCTGGTGTTACATGAACGTCGCATTEST: gi|88964563|gb|CI069911.1|CI069911
genomic: TGTTGACACCTCATGCTGAGTACTGCCTTCCAGGCATTACGCGTGCAACTgtaagtctaa ... aaattaacagGTCATGGATCTTGTGGTAAAAGAGAGCCTGGTGTTACATGAACGTCGCATT
EST: TGTTGACACCTCATGCTGAGTACTGCCTTCCAGGCATTACGCGTGCAACT GTCATGGATCTTGTGGTAAAAGAGAGCCTGGTGTTACATGAACGTCGCATTEST: gi|86433061|gb|CI093404.1|CI093404
genomic: TGTTGACACCTCATGCTGAGTACTGCCTTCCAGGCATTACGCGTGCAACTgtaagtctaa ... aaattaacagGTCATGGATCTTGTGGTAAAAGAGAGCCTGGTGTTACATGAACGTCGCATT
EST: TACTGCCTTCCAGGCATTACGCGTGCAACT GTCATGGATCTTGTGGTAAAAGAGAGCCTGGTGTTACATGAACGTCGCATTEST: gi|89166610|gb|CI103896.1|CI103896
genomic: TACTGCCTTCCAGGCATTACGCGTGCAACTgtaagtctaa ... aaattaacagGTCATGGATCTTGTGGTAAAAGAGAGCCTGGTGTTACATGAACGTCGCATT
EST: TGTTGACACCTCATGCTGAGTACTGCCTTCCAGGCATTACGCGTGCAACT GTCATGGATCTTGTGGTAAAAGAGAGCCTGGTGTTACATGAACGTCGCATTEST: gi|86889408|gb|CI317208.1|CI317208
genomic: TGTTGACACCTCATGCTGAGTACTGCCTTCCAGGCATTACGCGTGCAACTgtaagtctaa ... aaattaacagGTCATGGATCTTGTGGTAAAAGAGAGCCTGGTGTTACATGAACGTCGCATT
EST: TG-TGACACCTCATGCTGAGTACTCCCTTCCAGGCATTACGCGTGCAACT GTCATGGATCTTGTGGTAAAAGAGAGCCTGGTGTTACATGAACGTCGCATTEST: gi|325493657|gb|JG458181.1|JG458181
genomic: TGTTGACACCTCATGCTGAGTACTGCCTTCCAGGCATTACGCGTGCAACTgtaagtctaa ... aaattaacagGTCATGGATCTTGTGGTAAAAGAGAGCCTGGTGTTACATGAACGTCGCATT
EST: GTTGACACCTCATGCTGAGTACTGCCTTCCAGGCATTACGCGTGCAACT GTCATGGATCTTGTGGTAAAAGAGAGCCTGGTGTTACATGAACGTCGCATTEST: gi|86483123|gb|CI125756.1|CI125756
genomic: GTTGACACCTCATGCTGAGTACTGCCTTCCAGGCATTACGCGTGCAACTgtaagtctaa ... aaattaacagGTCATGGATCTTGTGGTAAAAGAGAGCCTGGTGTTACATGAACGTCGCATT
EST: TGTTGACACCTCATGCTGAGTACTGCCTTCCAGGCATTACGCGTGCAACT GTCATGGATCTTGTGGTAAAAGAGAGCCTGGTGTTACATGAACGTCGCATTEST: gi|58665374|gb|CK054060.1|CK054060
genomic: TGTTGACACCTCATGCTGAGTACTGCCTTCCAGGCATTACGCGTGCAACTgtaagtctaa ... aaattaacagGTCATGGATCTTGTGGTAAAAGAGAGCCTGGTGTTACATGAACGTCGCATT
EST: TGTTGACACCTCATGCTGAGTACTGCCTTCCAGGCATTACGCGTGCAACT GTCATGGATCTTGTGGTAAAAGAGAGCCTGGTGTTACATGAACGTCGCATTEST: gi|88958377|gb|CI095895.1|CI095895
genomic: TGTTGACACCTCATGCTGAGTACTGCCTTCCAGGCATTACGCGTGCAACTgtaagtctaa ... aaattaacagGTCATGGATCTTGTGGTAAAAGAGAGCCTGGTGTTACATGAACGTCGCATT
EST: TGTTGACACCTCATGCTGAGTACTGCCTTCCAGGCATTACGCGTGCAACT GTCATGGATCTTGTGGTAAAAGAGAGCCTGGTGTTACATGAACGTCGCATTEST: gi|86426440|gb|CI071537.1|CI071537
genomic: TGTTGACACCTCATGCTGAGTACTGCCTTCCAGGCATTACGCGTGCAACTgtaagtctaa ... aaattaacagGTCATGGATCTTGTGGTAAAAGAGAGCCTGGTGTTACATGAACGTCGCATT
EST: CTTCCAGGCATTACGCGTGCAACT GTCATGGATCTTGTGGTAAAGGAGAGCCTGGTGTTACATGAACGTCGCATTEST: gi|29621730|gb|CB626741.1|CB626741
genomic: CTTCCAGGCATTACGCGTGCAACTgtaagtctaa ... aaattaacagGTCATGGATCTTGTGGTAAAAGAGAGCCTGGTGTTACATGAACGTCGCATT
EST: TGTTGACACCTCATGCTGAGTACTGCCTTCCAGGCATTACGCGTGCAACT GTCATGGATCTTGTGGTAAAAGAGAGCCTGGTGTTACATGAACGTCGCATTEST: gi|89187323|gb|CI047390.1|CI047390
genomic: TGTTGACACCTCATGCTGAGTACTGCCTTCCAGGCATTACGCGTGCAACTgtaagtctaa ... aaattaacagGTCATGGATCTTGTGGTAAAAGAGAGCCTGGTGTTACATGAACGTCGCATT
EST: CGCGTGCAACT GTCATGGATCTTGTGGTAAAAGAGAGCCTGGTGTTACATGAACGTCGCATT
genomic: CGCGTGCAACTgtaagtctaa ... aaattaacagGTCATGGATCTTGTGGTAAAAGAGAGCCTGGTGTTACATGAACGTCGCATT
cagaagagtcatatttgctgatgctaatatttttcatgttggatgaaattaacagGTCATGGATCTTGTGGTAAAAGAGAGCCTGGTGTTACATGAACGTCGCATTAGTTTATCAGAATTTCATGCTGCAGACGAG
tgctaat putative branch site (score: 25)
taatatttttcatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cactatgtgattatcaagttgaacaaacttcttttctggaaaaatcagaagagtcatatttgctgatgctaatatttttcatgttggatgaaattaacagGTCATGGATCTTGTGGTAAAAGAGAGCCTGGTGTTACATGAACGTCGCATTAGTTTATCAGAATTTCATGCTGCAGACGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - -tgtgatt
- - - - - - - - - - gaacaaa
- - - - - - - - - - - - - - - -ttttctg
- - - - - - - - - - - - - - - - - - - gaaaaatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttggatg