1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' |
...gtccacctaaatatgcttcttagggatgctactgaattattcttcccttgtttgttacggtccttacattttgagcaagtgatatttcatcctttggcagGTCCAGCCGCATTTAGACCGCGTGTCCATGCAACCTCAGTGTATAGTCCATTAGTCGAAAATGGGCGTCCTGTACTACAAGGGCTTTTGGCTGTCGATAT
species | Oryza sativa |
transcript | LOC_Os08g22864.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: GCCAGCAATATTTGTAGATTACCGAAAATGTGTTCAACAGGCTATATCTA GTCCAGCCGCATTTA-ACCGCGTGTCCATGCAACCTCAGTGTATAGTCCATEST: gi|58669478|gb|CK058164.1|CK058164
genomic: GCCAGCAATATTTGTAGATTACCGAAAATGTGTTCAACAGGCTATATCTAgtaagttatc ... cctttggcagGTCCAGCCGCATTTAGACCGCGTGTCCATGCAACCTCAGTGTATAGTCCAT
EST: GCCAGCAATATTTGTAGATTACCGAAAATGTGTTCAACAGGCTATATCTA GTCCAGCCGCATTTAGACCGCGTGTCCATGCEST: gi|58691060|gb|CK079747.1|CK079747
genomic: GCCAGCAATATTTGTAGATTACCGAAAATGTGTTCAACAGGCTATATCTAgtaagttatc ... cctttggcagGTCCAGCCGCATTTAGACCGCGTGTCCATGC
EST: GCCAGCAATATTTGTAGATTACCGAAAATGTGTTCAACAGGCTATATCTA GTCCAGCCGCATTTAGACCGCGTGTCCATGCAACCTCAGTGTATAGTCCATEST: gi|58677228|gb|CK065915.1|CK065915
genomic: GCCAGCAATATTTGTAGATTACCGAAAATGTGTTCAACAGGCTATATCTAgtaagttatc ... cctttggcagGTCCAGCCGCATTTAGACCGCGTGTCCATGCAACCTCAGTGTATAGTCCAT
EST: GCCAGCAATATTTGTAGATTACCGAAAATGTGTTCAACAGGCTATATCTA GTCCAGCCGCATTTAGACCGCGTGTCCATGCAACCTCAGTGTATAGTCCATEST: gi|58654931|gb|CK043611.1|CK043611
genomic: GCCAGCAATATTTGTAGATTACCGAAAATGTGTTCAACAGGCTATATCTAgtaagttatc ... cctttggcagGTCCAGCCGCATTTAGACCGCGTGTCCATGCAACCTCAGTGTATAGTCCAT
EST: GCCAGCAATATTTGTAGATTACCGAAAATGTGTTCAACAGGCTATATCTA GTCCAGCCGCATTTAGACCGCGTGTCCATGCAACCTCAGTGTATAGTCCATEST: gi|29665535|gb|CB661810.1|CB661810
genomic: GCCAGCAATATTTGTAGATTACCGAAAATGTGTTCAACAGGCTATATCTAgtaagttatc ... cctttggcagGTCCAGCCGCATTTAGACCGCGTGTCCATGCAACCTCAGTGTATAGTCCAT
EST: GCCAGCAATATTTGTAGATTACCGAAAATGTGTTCAACAGGCTATATCTA GTCCAGCCGCATTTAGACCGCGTGTCCATGCAACCTCAGTGTATAGTCCATEST: gi|218502076|gb|FG960994.1|FG960994
genomic: GCCAGCAATATTTGTAGATTACCGAAAATGTGTTCAACAGGCTATATCTAgtaagttatc ... cctttggcagGTCCAGCCGCATTTAGACCGCGTGTCCATGCAACCTCAGTGTATAGTCCAT
EST: GCCAGCAATATTTGTAGATTACCGAAAATGTGTTCAACAGGCTATATCTA GTCCAGCCGCATTTAGACCGCGTGTCCATGCAACCTCAGTGTATAGTCCATEST: gi|58610277|gb|CK038129.1|CK038129
genomic: GCCAGCAATATTTGTAGATTACCGAAAATGTGTTCAACAGGCTATATCTAgtaagttatc ... cctttggcagGTCCAGCCGCATTTAGACCGCGTGTCCATGCAACCTCAGTGTATAGTCCAT
EST: GCCAGCAATATTTGTAGATTACCGAAAATGTGTTCAACAGGCTATATCTA GTCCAGCCGCATTTAGACCGCGTGTCCATGCAACCTCAGTGTATAGTCCATEST: gi|58672488|gb|CK061174.1|CK061174
genomic: GCCAGCAATATTTGTAGATTACCGAAAATGTGTTCAACAGGCTATATCTAgtaagttatc ... cctttggcagGTCCAGCCGCATTTAGACCGCGTGTCCATGCAACCTCAGTGTATAGTCCAT
EST: CCAGCAATATTTGTAGATTNACCGAAAATGTGTTCAACAGGCTATATCTA GTCCAGCCGCATTTAGACCGCGTGTCCATGCAACCTCAGTGTATAGTCCAT
genomic: CCAGCAATATTTGTAGATT-ACCGAAAATGTGTTCAACAGGCTATATCTAgtaagttatc ... cctttggcagGTCCAGCCGCATTTAGACCGCGTGTCCATGCAACCTCAGTGTATAGTCCAT
ccttgtttgttacggtccttacattttgagcaagtgatatttcatcctttggcagGTCCAGCCGCATTTAGACCGCGTGTCCATGCAACCTCAGTGTATAGTCCATTAGTCGAAAATGGGCGTCCTGTACTACAAGGGCTTTTGGCTGTCGATAT
tccttac putative branch site (score: 27)
tttcatccttt putative PPT
ttacatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtccacctaaatatgcttcttagggatgctactgaattattcttcccttgtttgttacggtccttacattttgagcaagtgatatttcatcctttggcagGTCCAGCCGCATTTAGACCGCGTGTCCATGCAACCTCAGTGTATAGTCCATTAGTCGAAAATGGGCGTCCTGTACTACAAGGGCTTTTGGCTGTCGATAT
- - acctaaa
- - - - - - -tgcttct
- - - - - - - - - - - - - tgctact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcaagtg