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gttaacagctgcatccaatcaccttgtataattcacatatactgctaaagcagtaattctaaaaacatcatttttttttacatccacagAAAGGGAACTGGAGATGGAGGATGCCGAGCTCTGTCAGCTTCGACAGCCTCAGCCCTGAAGCGGCGAAGCTGAAGGAATTGCTTGGACTGTACAACCGGC
species | Oryza sativa |
transcript | LOC_Os07g43390.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: ACATTCTTGGCCTCGACAGTTCTGCTAGAATGAATACTCCAGCTACACAG AAAGGGAACTGGAGATGGAGGATGCCGAGCTCTGTCAGCTTCGACAGCCTCEST: gi|88538510|gb|CI467546.1|CI467546
genomic: ACATTCTTGGCCTCGACAGTTCTGCTAGAATGAATACTCCAGCTACACAGgttaacagct ... acatccacagAAAGGGAACTGGAGATGGAGGATGCCGAGCTCTGTCAGCTTCGACAGCCTC
EST: ACATTCTTGGCCTCGACAGTTCTGCTAGAATGAATACTCCAGCTACACAG AAAGGGAACTGGAGATGGAGGATGCCGAGCTCTGTCAGCTTCGACAGCCTCEST: gi|89176204|gb|CI043225.1|CI043225
genomic: ACATTCTTGGCCTCGACAGTTCTGCTAGAATGAATACTCCAGCTACACAGgttaacagct ... acatccacagAAAGGGAACTGGAGATGGAGGATGCCGAGCTCTGTCAGCTTCGACAGCCTC
EST: CATTCTTGGCCTCGACAGTTCTGCTAGAATGAATACTCCAGCTACACAG AAAGGGAACTGGAGATGGAGGATGCCGAGCTCTGTCAGCTTCGACAGCCTCEST: gi|88225194|gb|CI225110.1|CI225110
genomic: CATTCTTGGCCTCGACAGTTCTGCTAGAATGAATACTCCAGCTACACAGgttaacagct ... acatccacagAAAGGGAACTGGAGATGGAGGATGCCGAGCTCTGTCAGCTTCGACAGCCTC
EST: ACATTCTTGGCCTCGACAGTTCTGCTAGAATGAATACTCCAGCTACACAG AAAGGGAACTGGAGATGGAGGATGCCGAGCTCTGTCAGCTTCGACAGCCTCEST: gi|86837121|gb|CI347629.1|CI347629
genomic: ACATTCTTGGCCTCGACAGTTCTGCTAGAATGAATACTCCAGCTACACAGgttaacagct ... acatccacagAAAGGGAACTGGAGATGGAGGATGCCGAGCTCTGTCAGCTTCGACAGCCTC
EST: ACATTCTTGGCCTCGACAGTTCTGCTAGAATGAATACTCCAGCTACACAG AAAGGGAACTGGAGATGGAGGATGCCGAGCTCTGTCAGCTTCGACAGCCTCEST: gi|88832166|gb|CI017400.1|CI017400
genomic: ACATTCTTGGCCTCGACAGTTCTGCTAGAATGAATACTCCAGCTACACAGgttaacagct ... acatccacagAAAGGGAACTGGAGATGGAGGATGCCGAGCTCTGTCAGCTTCGACAGCCTC
EST: ACATTCTTGGCCTCGACAGTTCTGCTAGAATGAATACTCCAGCTACACAG AAAGGGAACTGGAGATGGAGGATGCCGAGCTCTGTCAGCTTCGACAGCCTCEST: gi|89186521|gb|CI048193.1|CI048193
genomic: ACATTCTTGGCCTCGACAGTTCTGCTAGAATGAATACTCCAGCTACACAGgttaacagct ... acatccacagAAAGGGAACTGGAGATGGAGGATGCCGAGCTCTGTCAGCTTCGACAGCCTC
EST: ACATTCTTGGCCTCGACAGTTCTGCTAGAATGAATACTCCAGCTACACAG AAAGGGAAACTGGAGATGGAG-A-GC-G-GCTCTGTCAGCTTCGACAGCCTEST: gi|89163744|gb|CI100634.1|CI100634
genomic: ACATTCTTGGCCTCGACAGTTCTGCTAGAATGAATACTCCAGCTACACAGgttaacagct ... acatccacagAAAGGGAA-CTGGAGATGGAGGATGCCGAGCTCTGTCAGCTTCGACAGCCT
EST: ACATTCTTGGCCTCGACAGTTCTGCTAGAATGAATACTCCAGCTACACAG AAAGGGAACTGGAGATGGAGGATGCCGAGCTCTGTCAGCTTCGACAGCCTCEST: gi|88223687|gb|CI223536.1|CI223536
genomic: ACATTCTTGGCCTCGACAGTTCTGCTAGAATGAATACTCCAGCTACACAGgttaacagct ... acatccacagAAAGGGAACTGGAGATGGAGGATGCCGAGCTCTGTCAGCTTCGACAGCCTC
EST: ACATTCTTGGCCTCGACAGTTCTGCTAGAATGAATACTCCAGCTACACAG AAAGGGAACTGGAGATGGAGGATGCCGAGCTCTGTCAGCTTCGACAGCCTCEST: gi|86504785|gb|CI147418.1|CI147418
genomic: ACATTCTTGGCCTCGACAGTTCTGCTAGAATGAATACTCCAGCTACACAGgttaacagct ... acatccacagAAAGGGAACTGGAGATGGAGGATGCCGAGCTCTGTCAGCTTCGACAGCCTC
EST: ACATTCTTGGCCTCGACAGTTCTGCTAGAATGAATACTCCAGCTACACAG AAAGGGAACTGGAGATGGAGGATGCCGAGCTCTGTCAGCTTCGACAGCCTC
genomic: ACATTCTTGGCCTCGACAGTTCTGCTAGAATGAATACTCCAGCTACACAGgttaacagct ... acatccacagAAAGGGAACTGGAGATGGAGGATGCCGAGCTCTGTCAGCTTCGACAGCCTC
acatatactgctaaagcagtaattctaaaaacatcatttttttttacatccacagAAAGGGAACTGGAGATGGAGGATGCCGAGCTCTGTCAGCTTCGACAGCCTCAGCCCTGAAGCGGCGAAGCTGAAGGAATTGCTTGGACTGTACAACCGGC
ttctaaa putative branch site (score: 45)
tttttttttacatcc putative PPT
taattctaaaaacatc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttaacagctgcatccaatcaccttgtataattcacatatactgctaaagcagtaattctaaaaacatcatttttttttacatccacagAAAGGGAACTGGAGATGGAGGATGCCGAGCTCTGTCAGCTTCGACAGCCTCAGCCCTGAAGCGGCGAAGCTGAAGGAATTGCTTGGACTGTACAACCGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA