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...tttaaaaaagagtcttgttgaatatataattgtgagctgtccacattattacatattatacatttatactaatgctctgttctgtctgattgccctgcagATATATGCGTCCAAATTTTGAGTACTGGTCCATGGTCAAGACGACATACAACAATTATAACAGTGATGTTGATGATGAGCTAGTGGACCTCGATGCACCT
species | Oryza sativa |
transcript | LOC_Os06g47350.2 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: CTTGACATGTTCTTCCCATTTGATCCTTATCTGCTAAAAGAATCCGACAG ATATATGCGTCCAAATTTTGAGTEST: gi|29678965|gb|CB675240.1|CB675240
genomic: CTTGACATGTTCTTCCCATTTGATCCTTATCTGCTAAAAGAATCCGACAGgtgtgcatca ... tgccctgcagATATATGCGTCCAAATTTTGAGT
EST: CTTGACATGTTCTTCCCATTTGATCCTTATCTGCTAAAAGAATCCGACAG ATATATGCGTCCAAATTTTGAGTACTGGTCCATGGTCAAGACGACATACAAEST: gi|29639209|gb|CB644218.1|CB644218
genomic: CTTGACATGTTCTTCCCATTTGATCCTTATCTGCTAAAAGAATCCGACAGgtgtgcatca ... tgccctgcagATATATGCGTCCAAATTTTGAGTACTGGTCCATGGTCAAGACGACATACAA
EST: CTTGACATGTTCTTCCCATTTGATCCTTATCTGCTAAAAGAATCCGACAG ATATATGCGTCCAAATTTTGAGTACTGGTCCATGGTCAAGACGACATACAAEST: gi|2799623|gb|AA752612.1|AA752612
genomic: CTTGACATGTTCTTCCCATTTGATCCTTATCTGCTAAAAGAATCCGACAGgtgtgcatca ... tgccctgcagATATATGCGTCCAAATTTTGAGTACTGGTCCATGGTCAAGACGACATACAA
EST: CTTGACATGTTCTTCCCATTTGATCCTTATCTGCTAAAAGAATCCGACTG ATATATGCGTCCAAATTTTGAGTACTGGTCCATGGTCAAGACGACATACAAEST: gi|58668152|gb|CK056838.1|CK056838
genomic: CTTGACATGTTCTTCCCATTTGATCCTTATCTGCTAAAAGAATCCGACAGgtgtgcatca ... tgccctgcagATATATGCGTCCAAATTTTGAGTACTGGTCCATGGTCAAGACGACATACAA
EST: CTTGACATGTTCTTCCCATTTGATCCTTATCTGCTAAAAGAATCCGACAG ATATATGCGTCCAAATTTTGAGTACTGGTCCATGGTCAAGACGACATACAAEST: gi|29624119|gb|CB629130.1|CB629130
genomic: CTTGACATGTTCTTCCCATTTGATCCTTATCTGCTAAAAGAATCCGACAGgtgtgcatca ... tgccctgcagATATATGCGTCCAAATTTTGAGTACTGGTCCATGGTCAAGACGACATACAA
EST: CTTGACATGTTCTTCCCATTTGATCCTTATCTGCTAAAAGAATCCGACAG ATATATGCGTCCAAATTTTGAGTACTGGTCCATGGTCAAGACGACATACAAEST: gi|29681087|gb|CB677362.1|CB677362
genomic: CTTGACATGTTCTTCCCATTTGATCCTTATCTGCTAAAAGAATCCGACAGgtgtgcatca ... tgccctgcagATATATGCGTCCAAATTTTGAGTACTGGTCCATGGTCAAGACGACATACAA
EST: CTTGACATGTTCTTCCCATTTGATCCTTATCTGCTAAAAGAATCCGACAG ATATATGCGTCCAAATTTTGAGTACTGGTCCATGGTCAAGACGACATACAAEST: gi|218504600|gb|FG967431.1|FG967431
genomic: CTTGACATGTTCTTCCCATTTGATCCTTATCTGCTAAAAGAATCCGACAGgtgtgcatca ... tgccctgcagATATATGCGTCCAAATTTTGAGTACTGGTCCATGGTCAAGACGACATACAA
EST: CTTGACATGTTCTTCCCATTTGATCCTTATCTGCTAAAAGAATCCGACAG ATATATGCGTCCAAATTTTGAGTACTGGTCCATEST: gi|86899426|gb|CI298203.1|CI298203
genomic: CTTGACATGTTCTTCCCATTTGATCCTTATCTGCTAAAAGAATCCGACAGgtgtgcatca ... tgccctgcagATATATGCGTCCAAATTTTGAGTACTGGTCCAT
EST: CTTGACATGTTCTTCCCATTTGATCCTTATCTGCTAAAAGAATCCGACAG ATATATGCGTCCAAATTTTGAGTACTGGTCCATGGTCAAGACGACATACAAEST: gi|66922574|gb|CX109422.1|CX109422
genomic: CTTGACATGTTCTTCCCATTTGATCCTTATCTGCTAAAAGAATCCGACAGgtgtgcatca ... tgccctgcagATATATGCGTCCAAATTTTGAGTACTGGTCCATGGTCAAGACGACATACAA
EST: CTTGACATGTTCTTCCCATTTGATCCTTATCTGCTAAAAGAATCCGACAG ATATATGCGTCCAAATTTTGAGTACTGGTCCATGGTCAAGACGACATACAAEST: gi|287055|gb|D15860.1|D15860
genomic: CTTGACATGTTCTTCCCATTTGATCCTTATCTGCTAAAAGAATCCGACAGgtgtgcatca ... tgccctgcagATATATGCGTCCAAATTTTGAGTACTGGTCCATGGTCAAGACGACATACAA
EST: CTTGACATGTTCTTCCCATTTGATCCTTATCTGCTAAAAGAATCCGACAG ATATATGCGTCCAAATTTTGAGTACTGGTCCATGGTCAAGACGACATACAAEST: gi|218500322|gb|FG953822.1|FG953822
genomic: CTTGACATGTTCTTCCCATTTGATCCTTATCTGCTAAAAGAATCCGACAGgtgtgcatca ... tgccctgcagATATATGCGTCCAAATTTTGAGTACTGGTCCATGGTCAAGACGACATACAA
EST: CTTGACATGTTCTTCCCATTTGATCCTTATCTGCTAAAAGAATCCGACAG ATATATGCGTCCAAATTTTGAGTACTGGTCCATGGTCAAGACGACATACAAEST: gi|29685787|gb|CB682062.1|CB682062
genomic: CTTGACATGTTCTTCCCATTTGATCCTTATCTGCTAAAAGAATCCGACAGgtgtgcatca ... tgccctgcagATATATGCGTCCAAATTTTGAGTACTGGTCCATGGTCAAGACGACATACAA
EST: CTTGACATGTTCTTCCCATTTGATCCTTATCTGCTAAAAGAATCCGACAG ATATATGCGTCCAAATTTTGAGTACTGGTCCATGGTCAAGACGACATACAAEST: gi|218504331|gb|FG952706.1|FG952706
genomic: CTTGACATGTTCTTCCCATTTGATCCTTATCTGCTAAAAGAATCCGACAGgtgtgcatca ... tgccctgcagATATATGCGTCCAAATTTTGAGTACTGGTCCATGGTCAAGACGACATACAA
EST: CTTGACATGTTCTTCCCATTTGATCCTTATCTGCTAAAAGAATCCGACAG ATATATGCGTCCAAATTTTGAGTACTGGTCCATGGTCAAGACGACATACAAEST: gi|218503709|gb|FG953299.1|FG953299
genomic: CTTGACATGTTCTTCCCATTTGATCCTTATCTGCTAAAAGAATCCGACAGgtgtgcatca ... tgccctgcagATATATGCGTCCAAATTTTGAGTACTGGTCCATGGTCAAGACGACATACAA
EST: CTTGACATGTTCTTCCCATTTGATCCTTATCTGCTAAAAGAATCCGACAG ATATATGCGTCCAAATTTTGAGTACTGGTCCATGGTCAAGACGACATACAAEST: gi|218499202|gb|FG956934.1|FG956934
genomic: CTTGACATGTTCTTCCCATTTGATCCTTATCTGCTAAAAGAATCCGACAGgtgtgcatca ... tgccctgcagATATATGCGTCCAAATTTTGAGTACTGGTCCATGGTCAAGACGACATACAA
EST: CTTGACATGTTCTTCCCATTTGATCCTTATCTGCTAAAAGAATCCGACAG ATATATGCGTCCAAATTTTGAGTACTGGTCCATGGTCAAGACGACATACAAEST: gi|29676282|gb|CB672557.1|CB672557
genomic: CTTGACATGTTCTTCCCATTTGATCCTTATCTGCTAAAAGAATCCGACAGgtgtgcatca ... tgccctgcagATATATGCGTCCAAATTTTGAGTACTGGTCCATGGTCAAGACGACATACAA
EST: CTTGACATGTTCTTCCCATTTGATCCTTATCTGCTAAAAGAATCCGACAG ATATATGCGTCCAAATTTTGAGTACTGGTCCATGGTCAAGACGACATACAAEST: gi|38480245|gb|CF964334.1|CF964334
genomic: CTTGACATGTTCTTCCCATTTGATCCTTATCTGCTAAAAGAATCCGACAGgtgtgcatca ... tgccctgcagATATATGCGTCCAAATTTTGAGTACTGGTCCATGGTCAAGACGACATACAA
EST: CTTGACATGTTCTTCCCATTTGATCCTTATCTGCTAAAAGAATCCGACAG ATATATGCGTCCAAATTTTGAGTACTGGTCCGGGGTCAAGACGACATACAAEST: gi|568168|gb|D39003.1|D39003
genomic: CTTGACATGTTCTTCCCATTTGATCCTTATCTGCTAAAAGAATCCGACAGgtgtgcatca ... tgccctgcagATATATGCGTCCAAATTTTGAGTACTGGTCCATGGTCAAGACGACATACAA
EST: GTTCTTCCCATTTGATCCTTATCTGCTAAAAGAATCCGACAG ATATATGCGTCCAAATTTTGAGTACTGGTCCATGGTCAAGACGACATACAAEST: gi|58680790|gb|CK069477.1|CK069477
genomic: GTTCTTCCCATTTGATCCTTATCTGCTAAAAGAATCCGACAGgtgtgcatca ... tgccctgcagATATATGCGTCCAAATTTTGAGTACTGGTCCATGGTCAAGACGACATACAA
EST: CTTGACATGTTCTTCCCATTTGATCCTTATCTGCTAAAAGAATCCGACAG ATATATGCGTCCAAATTTTGAGTACTGGTCCATGGTCAAGACGACATACAAEST: gi|56158395|gb|AU075492.2|AU075492
genomic: CTTGACATGTTCTTCCCATTTGATCCTTATCTGCTAAAAGAATCCGACAGgtgtgcatca ... tgccctgcagATATATGCGTCCAAATTTTGAGTACTGGTCCATGGTCAAGACGACATACAA
EST: CTTGACATGTTCTTCCCATTTGATCCTTATCTGCTAAAAGAATCCGACAG ATATATGCGTCCAAATTTTGAGTACTGGTCCATGGTCAAGACGACATACAAEST: gi|218492292|gb|FG954140.1|FG954140
genomic: CTTGACATGTTCTTCCCATTTGATCCTTATCTGCTAAAAGAATCCGACAGgtgtgcatca ... tgccctgcagATATATGCGTCCAAATTTTGAGTACTGGTCCATGGTCAAGACGACATACAA
EST: CTTGACATGTTCTTCCCATTTGATCCTTATCTGCTAAAAGAATCCGACAG ATATATGCGTCCAAATTTTGAGTACTGGTCCATGGT
genomic: CTTGACATGTTCTTCCCATTTGATCCTTATCTGCTAAAAGAATCCGACAGgtgtgcatca ... tgccctgcagATATATGCGTCCAAATTTTGAGTACTGGTCCATGGT
ttattacatattatacatttatactaatgctctgttctgtctgattgccctgcagATATATGCGTCCAAATTTTGAGTACTGGTCCATGGTCAAGACGACATACAACAATTATAACAGTGATGTTGATGATGAGCTAGTGGACCTCGATGCACCT
ttgccct CT-rich tract
acatattatacattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttaaaaaagagtcttgttgaatatataattgtgagctgtccacattattacatattatacatttatactaatgctctgttctgtctgattgccctgcagATATATGCGTCCAAATTTTGAGTACTGGTCCATGGTCAAGACGACATACAACAATTATAACAGTGATGTTGATGATGAGCTAGTGGACCTCGATGCACCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA