1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...actctcgctacagcgctttgcttgcaagaaatcgtctgtgttcttctggttccatagttttccagggtcaagtctcagtttctgccttgtaatgttgcagGAGGAATTAGAAAGCTCATACAATGCCAAGCTCCAGCAGTCCAAGAATACCTTGACTTGGTAAAATTCACTCAACTTCCAGCTGATCTTACCAACCTAGT
species | Oryza sativa |
transcript | LOC_Os05g29010.2 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: AGGTTTTTTCAGGGCATCGTTTCTGCAACCATTGCTGAAAGCCCTGCAAG GAGGAATTAGAAAGCTCATACAATGCCAAGCTCCAGCAGTCCCAAGAATAEST: gi|10930605|gb|AU160879.1|AU160879
genomic: AGG-TTTTTCAGGGCATCGTTTCTGCAACCATTGCTGAAAG-CCTGCAAGgtatgcagta ... aatgttgcagGAGGAATTAGAAAGCTCATACAATGCCAAGCTCCAGCAGT-CCAAGAATA
EST: TCAGGTTTTTCAGGGCATCGTTTCTGCAACCATTGCTGAAA-CCTGCAAG GAGGAATTAGAAAGCTCATACAATGCCAAGCTCCAGCAGTCCAAGAATACCEST: gi|33796820|gb|CF324277.1|CF324277
genomic: TCAGGTTTTTCAGGGCATCGTTTCTGCAACCATTGCTGAAAGCCTGCAAGgtatgcagta ... aatgttgcagGAGGAATTAGAAAGCTCATACAATGCCAAGCTCCAGCAGTCCAAGAATACC
EST: TCAGGTTTTTCAGGGCATCGTTTCTGCAACCATTGCTGAAAGCCTGCAAG GAGGAATTAGAAAGCTCATACAATGCCAAGCTCCAGCAGTCCAAGAATACCEST: gi|33795786|gb|CF323762.1|CF323762
genomic: TCAGGTTTTTCAGGGCATCGTTTCTGCAACCATTGCTGAAAGCCTGCAAGgtatgcagta ... aatgttgcagGAGGAATTAGAAAGCTCATACAATGCCAAGCTCCAGCAGTCCAAGAATACC
EST: TCAGGTTTTTCAGGGCATCGTTTCTGCAACCATTGCTGAAAGCCTGCAAG GAGGAATTAGAAAGCTCATACAATGCCAAGCTCCAGCAGTCCAAGAATACC
genomic: TCAGGTTTTTCAGGGCATCGTTTCTGCAACCATTGCTGAAAGCCTGCAAGgtatgcagta ... aatgttgcagGAGGAATTAGAAAGCTCATACAATGCCAAGCTCCAGCAGTCCAAGAATACC
ctggttccatagttttccagggtcaagtctcagtttctgccttgtaatgttgcagGAGGAATTAGAAAGCTCATACAATGCCAAGCTCCAGCAGTCCAAGAATACCTTGACTTGGTAAAATTCACTCAACTTCCAGCTGATCTTACCAACCTAGT
atagtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actctcgctacagcgctttgcttgcaagaaatcgtctgtgttcttctggttccatagttttccagggtcaagtctcagtttctgccttgtaatgttgcagGAGGAATTAGAAAGCTCATACAATGCCAAGCTCCAGCAGTCCAAGAATACCTTGACTTGGTAAAATTCACTCAACTTCCAGCTGATCTTACCAACCTAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT