1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
...agattcttgccatgaatccttatcatcttatgttaactatatcattcgactcacctactctctcttttattatataacattattttgatccgttctgtagGTTTTATGCTGCAGAGGTTGTAATTGGTCTCGAGTACCTTCATTGCCTAG
species | Oryza sativa |
transcript | LOC_Os04g23890.4 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: GCAGTGCTTGATAGGCAACCCATGAAAATTTTCAGGGAAGAATGTGCAAG GTTTTATGCTGCAGAGGTTGTAATTGGTCTCGAGTACCTTCATTGCCTAGEST: gi|33799059|gb|CF325389.1|CF325389
genomic: GCAGTGCTTGATAGGCAACCCATGAAAATTTTCAGGGAAGAATGTGCAAGgtacctgttc ... cgttctgtagGTTTTATGCTGCAGAGGTTGTAATTGGTCTCGAGTACCTTCATTGCCTAG
EST: GCAGTGCTTGATAGGCAACCCATGAAAATTTTCAGGGAAGAATGTGCAAG GTTTTATGCTGCAGAGGTTGTAATTGGTCTCGAGTACCTTCATTGCCTAGEST: gi|14571435|gb|BI118803.1|BI118803
genomic: GCAGTGCTTGATAGGCAACCCATGAAAATTTTCAGGGAAGAATGTGCAAGgtacctgttc ... cgttctgtagGTTTTATGCTGCAGAGGTTGTAATTGGTCTCGAGTACCTTCATTGCCTAG
EST: GCAGTGCTTGATAGGCAACCCATGAAAATTTTCAGGGAAGAATGTGCAAG GTTTTATGCTGCAGAGGTTGTAATTGGTCTCGAGTEST: gi|38470322|gb|CF954453.1|CF954453
genomic: GCAGTGCTTGATAGGCAACCCATGAAAATTTTCAGGGAAGAATGTGCAAGgtacctgttc ... cgttctgtagGTTTTATGCTGCAGAGGTTGTAATTGGTCTCGAGT
EST: GGCAACCCATGAAAATTTTCAGGGAAGAATGTGCAAG GTTTTATGCTGCAGAGGTTGTAATTGGTCTCGAGTACCTTCATTGCCTAGEST: gi|88306572|gb|CI671324.1|CI671324
genomic: GGCAACCCATGAAAATTTTCAGGGAAGAATGTGCAAGgtacctgttc ... cgttctgtagGTTTTATGCTGCAGAGGTTGTAATTGGTCTCGAGTACCTTCATTGCCTAG
EST: GCAGTGCTTGATAGGCAACCCATGAAAATTTTCAGGGAAGAATGTGCAAG GTTTTATGCTGCAGAGGTTGTAATTGGTCTCGAGTACCTTCATTGCCTAGEST: gi|88578420|gb|CI687351.1|CI687351
genomic: GCAGTGCTTGATAGGCAACCCATGAAAATTTTCAGGGAAGAATGTGCAAGgtacctgttc ... cgttctgtagGTTTTATGCTGCAGAGGTTGTAATTGGTCTCGAGTACCTTCATTGCCTAG
EST: GCAGTGCTTGATAGGCAACCCATGAAAATTTTCAGGGAAGAATGTGCAAG GTTTTATGCTGCAGAGGTTGTAATTGGTCTCGAGTACCTTCATTGCCTAGEST: gi|88580457|gb|CI697388.1|CI697388
genomic: GCAGTGCTTGATAGGCAACCCATGAAAATTTTCAGGGAAGAATGTGCAAGgtacctgttc ... cgttctgtagGTTTTATGCTGCAGAGGTTGTAATTGGTCTCGAGTACCTTCATTGCCTAG
EST: GCAGTGCTTGATAGGCAACCCATGAAAATTTTCAGGGAAGAATGTGCAAG GTTTCATGCTGCAGAGGTTGTAATTGGTCTCGAGTACCTTCATTGCCTAGEST: gi|29684157|gb|CB680432.1|CB680432
genomic: GCAGTGCTTGATAGGCAACCCATGAAAATTTTCAGGGAAGAATGTGCAAGgtacctgttc ... cgttctgtagGTTTTATGCTGCAGAGGTTGTAATTGGTCTCGAGTACCTTCATTGCCTAG
EST: GCAGTGCTTGATAGGCAACCCATGAAAATTTTCAGGGAAGAATGTGCAAG GTTTTATGCTGCAGAGGTTGTAATTGGTCTCGAGTACCTTCATTGCCTAG
genomic: GCAGTGCTTGATAGGCAACCCATGAAAATTTTCAGGGAAGAATGTGCAAGgtacctgttc ... cgttctgtagGTTTTATGCTGCAGAGGTTGTAATTGGTCTCGAGTACCTTCATTGCCTAG
tcgactcacctactctctcttttattatataacattattttgatccgttctgtagGTTTTATGCTGCAGAGGTTGTAATTGGTCTCGAGTACCTTCATTGCCTAG
tccgttct CT-rich tract
tctcttttattatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agattcttgccatgaatccttatcatcttatgttaactatatcattcgactcacctactctctcttttattatataacattattttgatccgttctgtagGTTTTATGCTGCAGAGGTTGTAATTGGTCTCGAGTACCTTCATTGCCTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG