Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtttaataacatcattgcatgcatattagaatctattttctggcatggtattgctgtttccaatcgagttctctattagctgggctcagtatggcagtagtaatactaatttctaagatggtacccttcttcgactgtgtttaacttgcttataccgttgcttgcagGTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGATGAGCTGTCAGTACAGACAAATTAGAGAGCCAGGATATTAGGGCTAATC

Basic information

species Oryza sativa
transcript LOC_Os03g44900.1
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g44900.2 (Oryza sativa), 3'ss of exon 14
lower sequence: GRMZM2G100246_T01 (Zea mays), 3'ss of exon 5
gtatgtttaataacatcattgcatgcatattagaatctattttctggcatggtattgctgtttccaatcgagttctctattagctgggctcagtatggcagtagtaatactaatttctaagatggtacccttcttcgactgtgtt-taacttgcttataccgttgcttgcagGTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGATGAGCTGTCAGTACAGACAAATTAGAGAGCCAGGATATTAGGGCTAATC
                                                                   | |   |     ||||  | ||| | | | |  | | |   | |    |||    |  |  || | |||   |||| | |||| || |  || |  |||||||||||| || ||||||||||| |||||||||||||||||||||| ||| ||||||||||| |||||||| ||||| || || |||| |  | |||| ||  ||
--------------------------------------------------------------gtatgtgggccttaactttagtcgtgcttattttag-ggcattctgagtttactcttttttttttgccatgttcttttgtgctctaacctgttcctaacactgcttgcagGTGCCAAAGAATCAAGAATGACTTCACATTTGAGTACAACTACCTGGAGGATGAGCTATCAGTACAAACAAACTAAAGTGCCATGGCAGTAGGTCTGGTC

upper sequence: LOC_Os03g44900.2 (Oryza sativa), 3'ss of exon 14
lower sequence: GRMZM2G340749_T01 (Zea mays), 3'ss of exon 13
gtatgtttaataacatcattgcatgcatattagaatctattttctggcatggtattgctgtttccaatcgagttctctattagctgggctcagtatggcagtagtaatactaatttctaagatggtacccttcttcgactgtgtttaacttgcttataccgttgcttgcagGTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGATGAGCTGTCAGTACAGACAAATTAGAGAGCCAGGATATTAGGGCTAATC----
                           |||  |   || |  | ||     | |||| | |  |  |  |  || | | ||  ||    ||          | ||  |  |   || || | || |||  ||             |||| || |  || |  |||||||||||| || ||||||||||| ||||||||||| |||||||||||| | ||||||||||| |||||||| ||||| || ||     ||    |||| ||||||    
--------------------------gtatgtgggcctttcctttg----agcattgttataccgtagtgcattttgtgtttacttttttc----------ttgtcctgtt--cttttatgctgttactgtt----------agctaacctgttgctaacactgcttgcagGTGCCAAAGAATCAAGAATGACTTCACATTCGAGTACAACTTCTTGGAGGATGAGCTATCAGTACAAACAAACTAAAGT----GGGCTGTAGGTCTAATCAAAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88662190|gb|CI466119.1|CI466119
EST:     TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATG                         GTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
genomic: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATGgtatgtttaa ... ttgcttgcagGTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
EST: gi|88534629|gb|CI463367.1|CI463367
EST:     TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATG                         GTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
genomic: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATGgtatgtttaa ... ttgcttgcagGTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
EST: gi|89195186|gb|CI051299.1|CI051299
EST:     TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATG                         GTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
genomic: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATGgtatgtttaa ... ttgcttgcagGTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
EST: gi|89178711|gb|CI391709.1|CI391709
EST:     TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATG                         GTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
genomic: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATGgtatgtttaa ... ttgcttgcagGTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
EST: gi|86522596|gb|CI162802.1|CI162802
EST:     TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATG                         GTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
genomic: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATGgtatgtttaa ... ttgcttgcagGTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
EST: gi|88524715|gb|CI453658.1|CI453658
EST:     TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATG                         GTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
genomic: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATGgtatgtttaa ... ttgcttgcagGTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
EST: gi|88291966|gb|CI532558.1|CI532558
EST:     TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATG                         GTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
genomic: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATGgtatgtttaa ... ttgcttgcagGTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
EST: gi|88663925|gb|CI488387.1|CI488387
EST:     TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATG                         GTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
genomic: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATGgtatgtttaa ... ttgcttgcagGTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
EST: gi|29630459|gb|CB635468.1|CB635468
EST:     TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATG                         GTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
genomic: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATGgtatgtttaa ... ttgcttgcagGTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
EST: gi|88552635|gb|CI482662.1|CI482662
EST:     TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATG                         GTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
genomic: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATGgtatgtttaa ... ttgcttgcagGTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
EST: gi|88549386|gb|CI479272.1|CI479272
EST:     TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATG                         GTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
genomic: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATGgtatgtttaa ... ttgcttgcagGTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
EST: gi|88663021|gb|CI477176.1|CI477176
EST:     TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATG                         GTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
genomic: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATGgtatgtttaa ... ttgcttgcagGTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
EST: gi|8527420|gb|AU092235.1|AU092235
EST:     TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATG                         GTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
genomic: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATGgtatgtttaa ... ttgcttgcagGTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
EST: gi|88662788|gb|CI474166.1|CI474166
EST:     TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATG                         GTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
genomic: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATGgtatgtttaa ... ttgcttgcagGTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
EST: gi|88268296|gb|CI378231.1|CI378231
EST:     TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATG                         GTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
genomic: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATGgtatgtttaa ... ttgcttgcagGTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
EST: gi|88289106|gb|CI520436.1|CI520436
EST:     TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATG                         GTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
genomic: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATGgtatgtttaa ... ttgcttgcagGTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
EST: gi|88469340|gb|CI406611.1|CI406611
EST:     TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATG                         GTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
genomic: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATGgtatgtttaa ... ttgcttgcagGTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
EST: gi|88275469|gb|CI395320.1|CI395320
EST:     TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATG                         GTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
genomic: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATGgtatgtttaa ... ttgcttgcagGTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
EST: gi|88524842|gb|CI453795.1|CI453795
EST:     TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATG                         GTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
genomic: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATGgtatgtttaa ... ttgcttgcagGTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
EST: gi|88294989|gb|CI522943.1|CI522943
EST:     TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATG                         GTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
genomic: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATGgtatgtttaa ... ttgcttgcagGTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
EST: gi|88663563|gb|CI483262.1|CI483262
EST:     TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATG                         GTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
genomic: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATGgtatgtttaa ... ttgcttgcagGTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
EST: gi|88533075|gb|CI460608.1|CI460608
EST:     TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATG                         GTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
genomic: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATGgtatgtttaa ... ttgcttgcagGTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
EST: gi|33812923|gb|CF332349.1|CF332349
EST:     TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATG                         GTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
genomic: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATGgtatgtttaa ... ttgcttgcagGTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
EST: gi|29676310|gb|CB672585.1|CB672585
EST:     TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATG                         GTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
genomic: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATGgtatgtttaa ... ttgcttgcagGTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
EST: gi|88436844|gb|CI521595.1|CI521595
EST:     TATNTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATG                         GTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
genomic: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATGgtatgtttaa ... ttgcttgcagGTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
EST: gi|88555146|gb|CI485384.1|CI485384
EST:     TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATG                         GTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
genomic: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATGgtatgtttaa ... ttgcttgcagGTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
EST: gi|88527958|gb|CI456157.1|CI456157
EST:     TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATG                         GTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
genomic: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATGgtatgtttaa ... ttgcttgcagGTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
EST: gi|4715388|gb|AU056505.1|AU056505
EST:     TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATG                         GTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
genomic: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATGgtatgtttaa ... ttgcttgcagGTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
EST: gi|29667066|gb|CB663341.1|CB663341
EST:     TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATG                         GTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
genomic: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATGgtatgtttaa ... ttgcttgcagGTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
EST: gi|86602926|gb|CI357290.1|CI357290
EST:     TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATG                         GTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
genomic: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATGgtatgtttaa ... ttgcttgcagGTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
EST: gi|88546591|gb|CI476243.1|CI476243
EST:     TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATG                         GTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
genomic: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATGgtatgtttaa ... ttgcttgcagGTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
EST: gi|15857481|gb|BI810293.1|BI810293
EST:     ATGTGTACTTTGATTTCCATGGTCATAGATGACGGCACAGGATCAGGATG                         GTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
genomic: ATGTGTACTTTGATTTCCAT-GTCATAGATGACGGCACAGGATCAGGATGgtatgtttaa ... ttgcttgcagGTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
EST: gi|88554682|gb|CI484875.1|CI484875
EST:     TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATG                         GTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
genomic: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATGgtatgtttaa ... ttgcttgcagGTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
EST: gi|88545133|gb|CI474673.1|CI474673
EST:     TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATG                         GTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
genomic: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATGgtatgtttaa ... ttgcttgcagGTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
EST: gi|88537023|gb|CI464832.1|CI464832
EST:     TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATG                         GTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
genomic: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATGgtatgtttaa ... ttgcttgcagGTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
EST: gi|88553572|gb|CI483693.1|CI483693
EST:     TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATG                         GTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
genomic: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATGgtatgtttaa ... ttgcttgcagGTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
EST: gi|86840245|gb|CI342475.1|CI342475
EST:     TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATG                         GTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
genomic: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATGgtatgtttaa ... ttgcttgcagGTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
EST: gi|88550632|gb|CI480626.1|CI480626
EST:     TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATG                         GTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
genomic: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATGgtatgtttaa ... ttgcttgcagGTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
EST: gi|88413912|gb|CI530884.1|CI530884
EST:     TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATG                         GTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA
genomic: TATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATGgtatgtttaa ... ttgcttgcagGTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 72 (upstream exon), 69 (downstream exon)
Score: 57

AACGGCACGTGGAGCCACAAGTTACAACTGATGAGTATGAGCGGGGATCTTATGTGTACTTTGATTTCCATGTCATAGATGACGGCACAGGATCAGGATGgtatgtttaa ... ttgcttgcagGTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGATGAGCTGTCAGTACAGACAAATTAGAGAGCCAGGATATTAGGGCTAATC




<











<


<











 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctaagatggtacccttcttcgactgtgtttaacttgcttataccgttgcttgcagGTGTCAGAGAATCAAGAACGACTTCACATTTGAGTACAACTTCCTTGAGGATGAGCTGTCAGTACAGACAAATTAGAGAGCCAGGATATTAGGGCTAATC
                          gtttaac  putative branch site (score: 57)
                           tttaactt  TA-rich tract