1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...agcaatgtgatttcaagggctttgcttactgttgtaacttgtaaacgaacaatagctaggatcatataacttaaacttgtcaccgattgtcacctttcagGTCCCAGCAGAAAACCATCATAAACTCAATGGCTGTAAATGAAGATGGTGTCTTGGCAACTGGAG
species | Oryza sativa |
transcript | LOC_Os03g21990.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: AATATAAAGAAGTTTAGCCTGCCCAAAGGCGAATTTCTACACAATATGCT GTCCCAGCAGAAAACCATCATAAACTCAATGGCTGTAAATGAAGATGGTGTEST: gi|33691858|gb|CF320097.1|CF320097
genomic: AATATAAAGAAGTTTAGCCTGCCCAAAGGCGAATTTCTACACAATATGCTgtgagcattc ... cacctttcagGTCCCAGCAGAAAACCATCATAAACTCAATGGCTGTAAATGAAGATGGTGT
EST: AATATAAAGAAGTTTAGCCTGCCCAAAGGCGAATTTCTACACAATATGCT GTCCCAGCAGAAAACCATCATAAACTCAATGGCTGTAAATGAAGATGGTGTEST: gi|29643709|gb|CB648716.1|CB648716
genomic: AATATAAAGAAGTTTAGCCTGCCCAAAGGCGAATTTCTACACAATATGCTgtgagcattc ... cacctttcagGTCCCAGCAGAAAACCATCATAAACTCAATGGCTGTAAATGAAGATGGTGT
EST: AATATAAAGAAGTTTAGCCTGCCCAAAGGCGAATTTCTACACAATATGCT GTCCCAGCAGAAAACCATCATAAACTCAATGGCTGTAAATGAAGATGGTGTEST: gi|29679953|gb|CB676228.1|CB676228
genomic: AATATAAAGAAGTTTAGCCTGCCCAAAGGCGAATTTCTACACAATATGCTgtgagcattc ... cacctttcagGTCCCAGCAGAAAACCATCATAAACTCAATGGCTGTAAATGAAGATGGTGT
EST: AATATAAAGAAGTTTAGCCTGCCCAAAGGCGAATTTCTACACAATATGCT GTCCCAGCAGAAAACCATCATAAACTCAATGGCTGTAAATGAAGATGGTGTEST: gi|29633915|gb|CB638924.1|CB638924
genomic: AATATAAAGAAGTTTAGCCTGCCCAAAGGCGAATTTCTACACAATATGCTgtgagcattc ... cacctttcagGTCCCAGCAGAAAACCATCATAAACTCAATGGCTGTAAATGAAGATGGTGT
EST: TTTAGCCTGCCCAAAGGCGAATTTTTACACAATATGCT GTCCCAGCAGAAAACCATCATAAACTCAATGGCTGTAAATGAAGATGGTGTEST: gi|29643713|gb|CB648720.1|CB648720
genomic: TTTAGCCTGCCCAAAGGCGAATTTCTACACAATATGCTgtgagcattc ... cacctttcagGTCCCAGCAGAAAACCATCATAAACTCAATGGCTGTAAATGAAGATGGTGT
EST: AATATAAAGAAGTTTAGCCTGCCCAAAGGCGAATTTCTACACAATATGCT GTCCCAGCAGAAAACCATCATAAACTCAATGGCTGTAAATGAAGATGGTGTEST: gi|88969983|gb|CI383485.1|CI383485
genomic: AATATAAAGAAGTTTAGCCTGCCCAAAGGCGAATTTCTACACAATATGCTgtgagcattc ... cacctttcagGTCCCAGCAGAAAACCATCATAAACTCAATGGCTGTAAATGAAGATGGTGT
EST: TCTACACAATATGCT GTCCCAGCAGAAAACCATCATAAACTCAATGGCTGTAAATGAAGATGGTGTEST: gi|86421611|gb|CI057600.1|CI057600
genomic: TCTACACAATATGCTgtgagcattc ... cacctttcagGTCCCAGCAGAAAACCATCATAAACTCAATGGCTGTAAATGAAGATGGTGT
EST: AAGTTTAGCCTGCCCAAAGGCGAATTTCTACACAATATGCT GTCCCAGCAGAAAACCATCATAAACTCAATGGCTGTAAATGAAGATGGTGT
genomic: AAGTTTAGCCTGCCCAAAGGCGAATTTCTACACAATATGCTgtgagcattc ... cacctttcagGTCCCAGCAGAAAACCATCATAAACTCAATGGCTGTAAATGAAGATGGTGT
cgaacaatagctaggatcatataacttaaacttgtcaccgattgtcacctttcagGTCCCAGCAGAAAACCATCATAAACTCAATGGCTGTAAATGAAGATGGTGTCTTGGCAACTGGAG
atataac putative branch site (score: 27)
tcacctttc putative PPT
atcatataacttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agcaatgtgatttcaagggctttgcttactgttgtaacttgtaaacgaacaatagctaggatcatataacttaaacttgtcaccgattgtcacctttcagGTCCCAGCAGAAAACCATCATAAACTCAATGGCTGTAAATGAAGATGGTGTCTTGGCAACTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - -tgtgatt
- - - - - - - - - - -ttgctta
- - - - - - - - - - - - - - ctgttgt
- - - - - - - - - - - - - - - - - - - - - - - gaacaat