1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gtaacagtgcatcatacagttttgtctttgtaatgtaacatgtgttgatctttttcactttgttttgatgtgcagCGAAGAGTCACTTCTGCAAGAGGACACTTCACTATCAGATGCGTTGAGCGATCTCCACCTGAAGGATGCAAGTGGTCAAACAAACCAATCCAGCAGATTG
species | Oryza sativa |
transcript | LOC_Os02g47410.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: GCTTCCACCTCATCAATACCGGATCCAGCTGATTGGGATCCAAACTATAG CGAAGAGTCACTTCTGCAAGAGGACACTTCACTATCAGATGCGTTGAGCGAEST: gi|29638403|gb|CB643412.1|CB643412
genomic: GCTTCCACCTCATCAATACCGGATCCAGCTGATTGGGATCCAAACTATAGgtaacagtgc ... tgatgtgcagCGAAGAGTCACTTCTGCAAGAGGACACTTCACTATCAGATGCGTTGAGCGA
EST: GCTTCCACCTCATCAATACCGGATCCAGCTGATTGGGATCCAAACTATAG CGAAGAGTCACTTCTGCAAGAGGACACTTCACTATCAGATGCGTTGAGCGAEST: gi|33793449|gb|CF322605.1|CF322605
genomic: GCTTCCACCTCATCAATACCGGATCCAGCTGATTGGGATCCAAACTATAGgtaacagtgc ... tgatgtgcagCGAAGAGTCACTTCTGCAAGAGGACACTTCACTATCAGATGCGTTGAGCGA
EST: CTTCCACCTCATCAATACCGGATCCAGCTGATTGGGGATCCAAACTATAG CGAAGAGTCACTTCTGCAAGAGGACACTTCACTATCEST: gi|218502075|gb|FG950070.1|FG950070
genomic: CTTCCACCTCATCAATACCGGATCCAGCTGATTGGG-ATCCAAACTATAGgtaacagtgc ... tgatgtgcagCGAAGAGTCACTTCTGCAAGAGGACACTTCACTATC
EST: GCTTCCACCTCATCAATACCGGATCCAGCTGATTGGGATCCAAACTATAG CGAAGAGTCACTTCTGCAAGAGGACACTTCACTATCAGATGCGTTGAGCGAEST: gi|218498653|gb|FG968593.1|FG968593
genomic: GCTTCCACCTCATCAATACCGGATCCAGCTGATTGGGATCCAAACTATAGgtaacagtgc ... tgatgtgcagCGAAGAGTCACTTCTGCAAGAGGACACTTCACTATCAGATGCGTTGAGCGA
EST: GCTTCCACCTCATCAATACCGGATCCAGCTGATTGGGATCCAAACTATAG CGAAGAGTCACTTCTGCAAGAGGACACTTCACTATCAGATGCGTTGAGCGAEST: gi|88416972|gb|CI573687.1|CI573687
genomic: GCTTCCACCTCATCAATACCGGATCCAGCTGATTGGGATCCAAACTATAGgtaacagtgc ... tgatgtgcagCGAAGAGTCACTTCTGCAAGAGGACACTTCACTATCAGATGCGTTGAGCGA
EST: GCTTCCACCTCATCAATACCGGATCCAGCTGATTGGGATCCAAACTATAG CGAAGAGTCACTTCTGCAAGAGGACACTTCACTATCAGATGCGTTGAGCGA
genomic: GCTTCCACCTCATCAATACCGGATCCAGCTGATTGGGATCCAAACTATAGgtaacagtgc ... tgatgtgcagCGAAGAGTCACTTCTGCAAGAGGACACTTCACTATCAGATGCGTTGAGCGA
tttgtctttgtaatgtaacatgtgttgatctttttcactttgttttgatgtgcagCGAAGAGTCACTTCTGCAAGAGGACACTTCACTATCAGATGCGTTGAGCGATCTCCACCTGAAGGATGCAAGTGGTCAAACAAACCAATCCAGCAGATTG
tctttttcactttgtt CT-rich tract
tttgtaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacagtgcatcatacagttttgtctttgtaatgtaacatgtgttgatctttttcactttgttttgatgtgcagCGAAGAGTCACTTCTGCAAGAGGACACTTCACTATCAGATGCGTTGAGCGATCTCCACCTGAAGGATGCAAGTGGTCAAACAAACCAATCCAGCAGATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT