1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtgagaagctcatcatcatcatcatcagaaacaccttttcttgcaagattacatatatatgctcactcatgctaaccattcattctgtcactgaaaaactgtttggtgttttcagATCAACGAATTCGTGAAGCGTTCGAGGTCAGCCAAGGTCCATGCTCACATAATCAGCCACCTGAAGAAGGAGATGCCGGCGCTGATGGGCAAGGCCAAGG
species | Oryza sativa |
transcript | LOC_Os04g57350.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: ACCTGCTCTCCGACCTGAATGACATTCCAAAGAAAGCCTGTGACCGTCGA ATCAACGAATTCGTGAAGCGTTCGAGGTCAGCCAAGGTCCATGCTCACATAEST: gi|86436508|gb|CI118230.1|CI118230
genomic: ACCTGCTCTCCGACCTGAATGACATTCCAAAGAAAGCCTGTGACCGTCGAgtgagaagct ... gtgttttcagATCAACGAATTCGTGAAGCGTTCGAGGTCAGCCAAGGTCCATGCTCACATA
EST: CCTGTGACCGTCGA ATCAACGAATTCGTGAAGCGTTCGAGGTCAGCCAAGGTCCATGCTCACATAEST: gi|25806656|gb|CA762617.1|CA762617
genomic: CCTGTGACCGTCGAgtgagaagct ... gtgttttcagATCAACGAATTCGTGAAGCGTTCGAGGTCAGCCAAGGTCCATGCTCACATA
EST: ACCTGCTCTCCGACCTGAATGACATTCCAAAGAAAGCCTGTGACCGTCGA ATCAACGAATTCGCGAAGCGTTCGAGGTCAGCCAAGGTCCATGCTCACATAEST: gi|86477340|gb|CI119973.1|CI119973
genomic: ACCTGCTCTCCGACCTGAATGACATTCCAAAGAAAGCCTGTGACCGTCGAgtgagaagct ... gtgttttcagATCAACGAATTCGTGAAGCGTTCGAGGTCAGCCAAGGTCCATGCTCACATA
EST: ACCTGCTCTCCGACCTGAATGACATTCCAAAGAAAGCCTGTGACCGTCGA ATCAACGAATTCGTGAAGCGTTCGAGGTCAGCCAAGGTCCATGCTCACATAEST: gi|86593975|gb|CI260204.1|CI260204
genomic: ACCTGCTCTCCGACCTGAATGACATTCCAAAGAAAGCCTGTGACCGTCGAgtgagaagct ... gtgttttcagATCAACGAATTCGTGAAGCGTTCGAGGTCAGCCAAGGTCCATGCTCACATA
EST: ACCTGCTCTCCGACCTGAATGACATTCCAAAGAAAGCCTGTGACCGTCGA ATCAACGAATTCGTGAAGCGTTCGAGGTCAGCCAAGGTCCATGCTCACATAEST: gi|89198074|gb|CI117552.1|CI117552
genomic: ACCTGCTCTCCGACCTGAATGACATTCCAAAGAAAGCCTGTGACCGTCGAgtgagaagct ... gtgttttcagATCAACGAATTCGTGAAGCGTTCGAGGTCAGCCAAGGTCCATGCTCACATA
EST: ACCTGCTCTCCGACCTGAATGACATTCCAAAGAAAGCCTGTGACCGTCGA ATCAACGAATTCGTGAAGCGTTCGAGGTCAGCCAAGGTCCATGCTCACATAEST: gi|86840234|gb|CI342468.1|CI342468
genomic: ACCTGCTCTCCGACCTGAATGACATTCCAAAGAAAGCCTGTGACCGTCGAgtgagaagct ... gtgttttcagATCAACGAATTCGTGAAGCGTTCGAGGTCAGCCAAGGTCCATGCTCACATA
EST: TCTCCGACCTGAATTACATTCCAAAGAAAGCCTGTGACCGTCGA ATCAACGAATTCGTGAAGCGTTCGAGGTCAGCCAAGGTCCATGCTCACATAEST: gi|88250416|gb|CI348646.1|CI348646
genomic: TCTCCGACCTGAATGACATTCCAAAGAAAGCCTGTGACCGTCGAgtgagaagct ... gtgttttcagATCAACGAATTCGTGAAGCGTTCGAGGTCAGCCAAGGTCCATGCTCACATA
EST: CTCCGACCTGAATGACATTCCAAATAAAGCCTGTGACCGTCGA ATCAACGAATTCGTGAAGCGTTCGAGGTCAGCCAAGGTCCATGCTCACATAEST: gi|87022084|gb|CI259156.1|CI259156
genomic: CTCCGACCTGAATGACATTCCAAAGAAAGCCTGTGACCGTCGAgtgagaagct ... gtgttttcagATCAACGAATTCGTGAAGCGTTCGAGGTCAGCCAAGGTCCATGCTCACATA
EST: ACCTGCTCTCCGACCTGAATGACATTCCAAAGAAAGCCTGTGACCGTCGA ATCAACGAATTCGTGAAGCGTTCGAGGTCAGCCAAGGTCCATGCTCACATAEST: gi|66928201|gb|CX115049.1|CX115049
genomic: ACCTGCTCTCCGACCTGAATGACATTCCAAAGAAAGCCTGTGACCGTCGAgtgagaagct ... gtgttttcagATCAACGAATTCGTGAAGCGTTCGAGGTCAGCCAAGGTCCATGCTCACATA
EST: ACCTGCTCTCCGACCTGAATGACATTCCAAAGAAAGCCTGTGACCGTCGA ATCAACGAATTCGTGAAGCGTTCGAGGTCAGCCAAGGTCCATGCTCACATA
genomic: ACCTGCTCTCCGACCTGAATGACATTCCAAAGAAAGCCTGTGACCGTCGAgtgagaagct ... gtgttttcagATCAACGAATTCGTGAAGCGTTCGAGGTCAGCCAAGGTCCATGCTCACATA
gctcactcatgctaaccattcattctgtcactgaaaaactgtttggtgttttcagATCAACGAATTCGTGAAGCGTTCGAGGTCAGCCAAGGTCCATGCTCACATAATCAGCCACCTGAAGAAGGAGATGCCGGCGCTGATGGGCAAGGCCAAGG
tgctaac putative branch site (score: 45)
tgttttc putative PPT
attcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagaagctcatcatcatcatcatcagaaacaccttttcttgcaagattacatatatatgctcactcatgctaaccattcattctgtcactgaaaaactgtttggtgttttcagATCAACGAATTCGTGAAGCGTTCGAGGTCAGCCAAGGTCCATGCTCACATAATCAGCCACCTGAAGAAGGAGATGCCGGCGCTGATGGGCAAGGCCAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT