1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' |
...ttgaaattgcagtaatatttgctgcttaggttttgatacatttatagttatcatgtcttgatcatgaagtatttttccttgtctgtttttttttttgtagTCTGTGGAATACAGCAAAATAGTAGCACAGCTGAAACCTGGGGAAAGTGAGGACGTGATATTATCAGCTTGCCAAAAGCTTGTGTCAATCTTCAATCAAC
species | Oryza sativa |
transcript | LOC_Os04g56530.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: GCATTTGATGAGACTATTCCTGGAGAGAGTCTTTTTCCTTTGCAG TCTGTGGAATACAGCAAAATAGTAGCACAGCTGAAACCTGGGGAAAGTGAGEST: gi|88354250|gb|CI637816.1|CI637816
genomic: GCATTTGATGAGACTATTCCTGGAGAGAGTCTTTTTCCTTTGCAGgtatgcgatg ... ttttttgtagTCTGTGGAATACAGCAAAATAGTAGCACAGCTGAAACCTGGGGAAAGTGAG
EST: GAACGGCATTTGATGAGACTATTCCTGGAGAGAGTCTTTTTCCTTTGCAG TCTGTGGAATACAGCAAAATAGTAGCACAGCTGAAACCTGGGGAAAGTGAGEST: gi|29622112|gb|CB627123.1|CB627123
genomic: GAACGGCATTTGATGAGACTATTCCTGGAGAGAGTCTTTTTCCTTTGCAGgtatgcgatg ... ttttttgtagTCTGTGGAATACAGCAAAATAGTAGCACAGCTGAAACCTGGGGAAAGTGAG
EST: GCATTTGATGAGACTATTCCTGGAGAGAGTCTTTTTCCTTTGCAG TCTGTGGAATACAGCAAAATAGTAGCACAGCTGAAACCTGGGGAAAGTGAGEST: gi|58606869|gb|CK034902.1|CK034902
genomic: GCATTTGATGAGACTATTCCTGGAGAGAGTCTTTTTCCTTTGCAGgtatgcgatg ... ttttttgtagTCTGTGGAATACAGCAAAATAGTAGCACAGCTGAAACCTGGGGAAAGTGAG
EST: GCATTTGATGAGACTATTCCTGGAGAGAGTCTTTTTCCTTTGCAG TCTGTGGAATACEST: gi|29641522|gb|CB646529.1|CB646529
genomic: GCATTTGATGAGACTATTCCTGGAGAGAGTCTTTTTCCTTTGCAGgtatgcgatg ... ttttttgtagTCTGTGGAATAC
EST: GCATTTGATGAGACTATTCCTGGAGAGAGTCTTTTTCCTTTGCAG TCTGTGGAATACAGCAAAATAGTAGCACAGCTGAAACCTGGGGAAAGTGAG
genomic: GCATTTGATGAGACTATTCCTGGAGAGAGTCTTTTTCCTTTGCAGgtatgcgatg ... ttttttgtagTCTGTGGAATACAGCAAAATAGTAGCACAGCTGAAACCTGGGGAAAGTGAG
agttatcatgtcttgatcatgaagtatttttccttgtctgtttttttttttgtagTCTGTGGAATACAGCAAAATAGTAGCACAGCTGAAACCTGGGGAAAGTGAGGACGTGATATTATCAGCTTGCCAAAAGCTTGTGTCAATCTTCAATCAAC
tcttgat putative branch site (score: 21)
tatttttccttgtctg putative PPT
tgtttttttttttgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgaaattgcagtaatatttgctgcttaggttttgatacatttatagttatcatgtcttgatcatgaagtatttttccttgtctgtttttttttttgtagTCTGTGGAATACAGCAAAATAGTAGCACAGCTGAAACCTGGGGAAAGTGAGGACGTGATATTATCAGCTTGCCAAAAGCTTGTGTCAATCTTCAATCAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - -tgcagta
- - - - - - - - - -tgctgct
- - - - - - - - - - - - - - - - -tgataca
- - - - - - - - - - - - - - - - - - - - - - - - -atcatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgaag