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gtaagttgaaatttattcagactactagtattgtgttgcaggggttttgctgattatgcttatgcatgaacatatcattcggattggactgcactaatctgcagaattgacattggattatcgactcgttttgggctcgctgtgcaacagGGAAGACCTGCTGATGATCAACAACAGATCATGGAGCTTCCCGATGAACAGAGTAGACGGAGCTTCCAAATGTTATCATCTTGGGTCGCCATGTCAATAC
species | Oryza sativa |
transcript | LOC_Os03g01750.2 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: GAAAGGCTGATGATTAGAGAGTACTTGGAACAGTACGTTGAGCGATAGAG GGAAGACCTGCTGATGAACAACAACAGATCATGGAGCTTCCCGATGAACAGEST: gi|88998256|gb|CI038141.1|CI038141
genomic: GAAAGGCTGATGATTAGAGAGTACTTGGAACAGTACGTTGAGCGATAGAGgtaagttgaa ... tgtgcaacagGGAAGACCTGCTGATGATCAACAACAGATCATGGAGCTTCCCGATGAACAG
EST: GAAAGGCTGATGATTAGAGAGTACTTGGAACAGTACGTTGAGCGATAGAG GGAAGACCTGCTGATGATCAACAACAGATCATGGAGCTTCCCGATGAACAGEST: gi|86900027|gb|CI300120.1|CI300120
genomic: GAAAGGCTGATGATTAGAGAGTACTTGGAACAGTACGTTGAGCGATAGAGgtaagttgaa ... tgtgcaacagGGAAGACCTGCTGATGATCAACAACAGATCATGGAGCTTCCCGATGAACAG
EST: GAAAGGCTGATGATTAGAGAGTACTTGGAACAGTACGTTGAGCGATAGAG GGAAGACCTGCTGATGATCAACAACAGATCATGGAGCTTCCCGATGAACAGEST: gi|58690530|gb|CK079217.1|CK079217
genomic: GAAAGGCTGATGATTAGAGAGTACTTGGAACAGTACGTTGAGCGATAGAGgtaagttgaa ... tgtgcaacagGGAAGACCTGCTGATGATCAACAACAGATCATGGAGCTTCCCGATGAACAG
EST: GAAAGGCTGATGATTAGAGAGTACTTGGAACAGTACGTTGAGCGATAGAG GGAAGACCTGCTGATGAACAACAACAGATCATGGAGCTTCCCGATGAACAG
genomic: GAAAGGCTGATGATTAGAGAGTACTTGGAACAGTACGTTGAGCGATAGAGgtaagttgaa ... tgtgcaacagGGAAGACCTGCTGATGATCAACAACAGATCATGGAGCTTCCCGATGAACAG
aatctgcagaattgacattggattatcgactcgttttgggctcgctgtgcaacagGGAAGACCTGCTGATGATCAACAACAGATCATGGAGCTTCCCGATGAACAGAGTAGACGGAGCTTCCAAATGTTATCATCTTGGGTCGCCATGTCAATAC
attat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttgaaatttattcagactactagtattgtgttgcaggggttttgctgattatgcttatgcatgaacatatcattcggattggactgcactaatctgcagaattgacattggattatcgactcgttttgggctcgctgtgcaacagGGAAGACCTGCTGATGATCAACAACAGATCATGGAGCTTCCCGATGAACAGAGTAGACGGAGCTTCCAAATGTTATCATCTTGGGTCGCCATGTCAATAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT