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...ttcctgaactagattgctctttgtccagcaaacaatactataaaattttcatagcacttggaatgtccttctgtctcctgagcctgtttataatatccagGTGTGTCTTTGTTGATGCGGGTGTGGCTGCCATTGACATTGAAACAAAAAAGAGGAAAGAAGAAATGAAAGCAAGAGAAGCTCAGAGTCGGGCGGCTGCA
species | Oryza sativa |
transcript | LOC_Os01g46510.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: GCCGTTTGGCATCGTAGGCAGTTGTTTGTGGCTACGCCCACCACCATCGA GTGTGTCTTTGTTGATGCGGGTGTGGCTGACATTGACATTGAAACAAAAAAEST: gi|58664662|gb|CK053348.1|CK053348
genomic: GCCGTTTGGCATCGTAGGCAGTTGTTTGTGGCTACGCCCACCACCATCGAgtaagccatc ... taatatccagGTGTGTCTTTGTTGATGCGGGTGTGGCTGCCATTGACATTGAAACAAAAAA
EST: GCCGTTTGGCATCGTAGGCAGTTGTTTGTGGCTACGCCCACCACCATCGA GTGTGTCTTTGTTGATGCGGGTGTGGCTGCCATTGACATTGAAACAAAAAAEST: gi|58666107|gb|CK054793.1|CK054793
genomic: GCCGTTTGGCATCGTAGGCAGTTGTTTGTGGCTACGCCCACCACCATCGAgtaagccatc ... taatatccagGTGTGTCTTTGTTGATGCGGGTGTGGCTGCCATTGACATTGAAACAAAAAA
EST: GCCGTTTGGCATCGTAGGCAGTTGTTTGTGGCTACGCCCACCACCATCGA GTGTGTCTTTGTTGATGCGGGTGTGGCTGCCATTGACATTGAAACAAAAAAEST: gi|58666827|gb|CK055513.1|CK055513
genomic: GCCGTTTGGCATCGTAGGCAGTTGTTTGTGGCTACGCCCACCACCATCGAgtaagccatc ... taatatccagGTGTGTCTTTGTTGATGCGGGTGTGGCTGCCATTGACATTGAAACAAAAAA
EST: GCCGTTTGGCATCGTAGGCAGTTGTTTGTGGCTACGCCCACCACCATCGA GTGTGTCTTTGTTGATGCGGGTGTGGCTGCCATTGACATTGAAACAAAAAAEST: gi|58665271|gb|CK053957.1|CK053957
genomic: GCCGTTTGGCATCGTAGGCAGTTGTTTGTGGCTACGCCCACCACCATCGAgtaagccatc ... taatatccagGTGTGTCTTTGTTGATGCGGGTGTGGCTGCCATTGACATTGAAACAAAAAA
EST: GCCGTTTGGCATCGTAGGCAGTTGTTTGTGGCTACGCCCACCACCATCGA GTGTGTCTTTGTTGATGCGGGTGTGGCTGCCATTGACATTGAAACAAAAAAEST: gi|58587152|gb|CF985460.1|CF985460
genomic: GCCGTTTGGCATCGTAGGCAGTTGTTTGTGGCTACGCCCACCACCATCGAgtaagccatc ... taatatccagGTGTGTCTTTGTTGATGCGGGTGTGGCTGCCATTGACATTGAAACAAAAAA
EST: GCCGTTTGGCATCGTAGGCAGTTGTTTGTGGCTACGCCCACCACCATCGA GTGTGTCTTTGTTGATGCGGGTGTGGCTGCCATTGACATTGAAACAAAAAAEST: gi|58612809|gb|CK040521.1|CK040521
genomic: GCCGTTTGGCATCGTAGGCAGTTGTTTGTGGCTACGCCCACCACCATCGAgtaagccatc ... taatatccagGTGTGTCTTTGTTGATGCGGGTGTGGCTGCCATTGACATTGAAACAAAAAA
EST: GCCGTTTGGCATCGTAGGCAGTTGTTTGTGGCTACGCCCACCACCATCGA GTGTGTCTTTGTTGATGCGGGTGTGGCTGCCATTGACATTGAAACAAAAAAEST: gi|58612142|gb|CK039854.1|CK039854
genomic: GCCGTTTGGCATCGTAGGCAGTTGTTTGTGGCTACGCCCACCACCATCGAgtaagccatc ... taatatccagGTGTGTCTTTGTTGATGCGGGTGTGGCTGCCATTGACATTGAAACAAAAAA
EST: GCCGTTTGGCATCGTAGGCAGTTGTTTGTGGCTACGCCCACCACCATCGA GTGTGTGTTTGTTGATGCGGGTGTGGCTGCCATTGACATTGAAACAAAAAAEST: gi|86889062|gb|CI314678.1|CI314678
genomic: GCCGTTTGGCATCGTAGGCAGTTGTTTGTGGCTACGCCCACCACCATCGAgtaagccatc ... taatatccagGTGTGTCTTTGTTGATGCGGGTGTGGCTGCCATTGACATTGAAACAAAAAA
EST: GCCGTTTGGCATCGTAGGCAGTTGTTTGTGGCTACGCCCACCACCATCGA GTGTGTCTTTGTTGATGCGGGTGTGGCTGCCATTGACATTGEST: gi|25804329|gb|CA760290.1|CA760290
genomic: GCCGTTTGGCATCGTAGGCAGTTGTTTGTGGCTACGCCCACCACCATCGAgtaagccatc ... taatatccagGTGTGTCTTTGTTGATGCGGGTGTGGCTGCCATTGACATTG
EST: GCCGTTTGGCATCGTAGGCAGTTGTTTGTGGCTACGCCCACCACCATCGA GTGTGTCTTTGTTGATGCGGGTGTGGCTGCCATTGACATTGAAACEST: gi|58662716|gb|CK051402.1|CK051402
genomic: GCCGTTTGGCATCGTAGGCAGTTGTTTGTGGCTACGCCCACCACCATCGAgtaagccatc ... taatatccagGTGTGTCTTTGTTGATGCGGGTGTGGCTGCCATTGACATTGAAAC
EST: GCCGTTTGGCATCGTAGGCAGTTGTTTGTGGCTACGCCCACCACCATCGA GTGTGTCTTTGTTGATGCGGGTGTGGCTGCCATTGACATTGAAACAAAAAAEST: gi|58666361|gb|CK055047.1|CK055047
genomic: GCCGTTTGGCATCGTAGGCAGTTGTTTGTGGCTACGCCCACCACCATCGAgtaagccatc ... taatatccagGTGTGTCTTTGTTGATGCGGGTGTGGCTGCCATTGACATTGAAACAAAAAA
EST: GCCGTTTGGCATCGTAGGCAGTTGTTTGTGGCTACGCCCACCACCATCGA GTGTGTCTTTGTTGATGCGGGTGTGGCTGCCATTGACATTGAAACAAEST: gi|88399115|gb|CI603782.1|CI603782
genomic: GCCGTTTGGCATCGTAGGCAGTTGTTTGTGGCTACGCCCACCACCATCGAgtaagccatc ... taatatccagGTGTGTCTTTGTTGATGCGGGTGTGGCTGCCATTGACATTGAAACAA
EST: GCCGTTTGGCATCGTAGGCAGTTGTTTGTGGCTACGCCCAC-ACCATCGA GTGTGTCTTTGTTGATGCGGGTGTGGCTGCCATTGACATTGAAACAAAAAAEST: gi|58669479|gb|CK058165.1|CK058165
genomic: GCCGTTTGGCATCGTAGGCAGTTGTTTGTGGCTACGCCCACCACCATCGAgtaagccatc ... taatatccagGTGTGTCTTTGTTGATGCGGGTGTGGCTGCCATTGACATTGAAACAAAAAA
EST: GCCGTTTGGCATCGTAGGCAGTTGTTTGTGGCTACGCCCACCACCATCGA GTGTGTCTTTGTTGATGCGGGTGTGGCTGCCATTGACATTGAAACAAAAAA
genomic: GCCGTTTGGCATCGTAGGCAGTTGTTTGTGGCTACGCCCACCACCATCGAgtaagccatc ... taatatccagGTGTGTCTTTGTTGATGCGGGTGTGGCTGCCATTGACATTGAAACAAAAAA
ttttcatagcacttggaatgtccttctgtctcctgagcctgtttataatatccagGTGTGTCTTTGTTGATGCGGGTGTGGCTGCCATTGACATTGAAACAAAAAAGAGGAAAGAAGAAATGAAAGCAAGAGAAGCTCAGAGTCGGGCGGCTGCA
tgtttataatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcctgaactagattgctctttgtccagcaaacaatactataaaattttcatagcacttggaatgtccttctgtctcctgagcctgtttataatatccagGTGTGTCTTTGTTGATGCGGGTGTGGCTGCCATTGACATTGAAACAAAAAAGAGGAAAGAAGAAATGAAAGCAAGAGAAGCTCAGAGTCGGGCGGCTGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA