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gtgagttacttcccagctccctagttccctgtatctgtggacgtgttggataggataacgtaacttgacgtcttcattgcagGTCTCCAGGGATGGTACCAGCGATGAAGAGAGAGAATTAAGGGAGCGTTTGACTGGTCAAAATCCCGATCTTACGAAGGAGGAAAGGCTGATGATTAGAG
species | Oryza sativa |
transcript | LOC_Os03g01750.2 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: AGAAGAAGACCAAAGCAAATGCTGATGGCCATGTGAATAACTACGTCCAG GTCTCCAGGGATGGTACCAEST: gi|2428616|gb|C73079.1|C73079
genomic: AGAAGAAGACCAAAGCAAATGCTGATGGCCATGTGAATAACTACGTCCAGgtgagttact ... ttcattgcagGTCTCCAGGGATGGTACCA
EST: AGAAGAAGACCAAAGCAAATGCTGATGGCCATGTGAATACCTACGTCCAG GTCTCCAGGGATGGTACCANCGATGAAGAGNGAGA-TTAAGGGN-CGTTT-EST: gi|38480383|gb|CF964472.1|CF964472
genomic: AGAAGAAGACCAAAGCAAATGCTGATGGCCATGTGAATAACTACGTCCAGgtgagttact ... ttcattgcagGTCTCCAGGGATGGTACCAGCGATGAAGAGAGAGAATTAAGGGAGCGTTTG
EST: GCTGATGGCCATGTGAATAACTACGTCCAG GTCTCCAGTGATGGTACCAGCGATGAAGAGAGAGAATTAAGGGAGCGTTTGEST: gi|88998256|gb|CI038141.1|CI038141
genomic: GCTGATGGCCATGTGAATAACTACGTCCAGgtgagttact ... ttcattgcagGTCTCCAGGGATGGTACCAGCGATGAAGAGAGAGAATTAAGGGAGCGTTTG
EST: AGAAGAAGACCAAAGCAAATGCTGATGGCCATGTGAATAACTACGTCCAG GTCTCCAGGGATGGTACCAGCGATGAAGAGAGAGAATTAAGGGAGCGTTTGEST: gi|88311093|gb|CI658006.1|CI658006
genomic: AGAAGAAGACCAAAGCAAATGCTGATGGCCATGTGAATAACTACGTCCAGgtgagttact ... ttcattgcagGTCTCCAGGGATGGTACCAGCGATGAAGAGAGAGAATTAAGGGAGCGTTTG
EST: AGAAGAAGACCAAAGCAAATGCTGATGGCCATGTGAATAACTACGTCCAG GTCTCCAGGGATGGTACCAGCGATGAAGAGAGAGAATTAAGGGAGCGTTTGEST: gi|86900027|gb|CI300120.1|CI300120
genomic: AGAAGAAGACCAAAGCAAATGCTGATGGCCATGTGAATAACTACGTCCAGgtgagttact ... ttcattgcagGTCTCCAGGGATGGTACCAGCGATGAAGAGAGAGAATTAAGGGAGCGTTTG
EST: AGAAGAAGACCAAAGCAAATGCTGATGGCCATGTGAATAACTACGTCCAG GTCTCCAGGGATGGTACCAGCGATGAAGAGAGAGAATTAAGGGAGCGTTTGEST: gi|58690530|gb|CK079217.1|CK079217
genomic: AGAAGAAGACCAAAGCAAATGCTGATGGCCATGTGAATAACTACGTCCAGgtgagttact ... ttcattgcagGTCTCCAGGGATGGTACCAGCGATGAAGAGAGAGAATTAAGGGAGCGTTTG
EST: AGAAGAAGACCAAAGCAAATGCTGATGGCCATGTGAATAACTACGTCCAG GTCTCCAGGGATGGTACCAGCGATGAAGAGAGAGAATTAAGGGAGCGTTTG
genomic: AGAAGAAGACCAAAGCAAATGCTGATGGCCATGTGAATAACTACGTCCAGgtgagttact ... ttcattgcagGTCTCCAGGGATGGTACCAGCGATGAAGAGAGAGAATTAAGGGAGCGTTTG
cctgtatctgtggacgtgttggataggataacgtaacttgacgtcttcattgcagGTCTCCAGGGATGGTACCAGCGATGAAGAGAGAGAATTAAGGGAGCGTTTGACTGGTCAAAATCCCGATCTTACGAAGGAGGAAAGGCTGATGATTAGAG
tcttcatt CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttacttcccagctccctagttccctgtatctgtggacgtgttggataggataacgtaacttgacgtcttcattgcagGTCTCCAGGGATGGTACCAGCGATGAAGAGAGAGAATTAAGGGAGCGTTTGACTGGTCAAAATCCCGATCTTACGAAGGAGGAAAGGCTGATGATTAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT