1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gttaggaagttcatattaagattctagaataatatgcacatgtttcaccgctctcaaaacattggggattcatctttgtctgcagGTTTCTAGTGTCAATAGGATACCTAAACCAAAACCCAAGATAGAAAAGAAACCTCCCAAGGAAGAAGAGTCTGCTAACAAAGAGAAAACTGACTCTTCGG
species | Oryza sativa |
transcript | LOC_Os02g48110.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: CTTTCACATCTGAAGAAGTCTACGAAAAAGTTCTGGACCTACAAGATAAG GTTTCTAGTGTCAATAGGATACCTAAACCAAAACCCAAGATEST: gi|27576359|gb|CA999053.1|CA999053
genomic: CTTTCACATCTGAAGAAGTCTACGAAAAAGTTCTGGACCTACAAGATAAGgttaggaagt ... ttgtctgcagGTTTCTAGTGTCAATAGGATACCTAAACCAAAACCCAAGAT
EST: CTTTCACATCTGAAGAAGTCTACGAAAAAGTTCTGGACCTACAAGATAAG GTTTCTAGTGTCAATAGGATACCTAAAACCAAA-CCCAAGATAGAAAAGAAEST: gi|86481739|gb|CI124372.1|CI124372
genomic: CTTTCACATCTGAAGAAGTCTACGAAAAAGTTCTGGACCTACAAGATAAGgttaggaagt ... ttgtctgcagGTTTCTAGTGTCAATAGGATACCTAAA-CCAAAACCCAAGATAGAAAAGAA
EST: CTTTCACATCTGAAGAAGTCTACGAAAAAGTTCTGGACCTACAAGATAAG GTTTCTAGTGTCAATAGGATACCTAAACCNAAACCCAAGATAGAAAAGAAAEST: gi|29673173|gb|CB669448.1|CB669448
genomic: CTTTCACATCTGAAGAAGTCTACGAAAAAGTTCTGGACCTACAAGATAAGgttaggaagt ... ttgtctgcagGTTTCTAGTGTCAATAGGATACCTAAACCAAAACCCAAGATAGAAAAGAAA
EST: CTTTCACATCTGAAGAAGTCTACGAAAAAGTTCTGGACCTACAAGATAAG GTTTCTAGTGTCAATAGGATACCTAAACCAAAACCCAAGATAGAAAAGAAAEST: gi|66914322|gb|CX101170.1|CX101170
genomic: CTTTCACATCTGAAGAAGTCTACGAAAAAGTTCTGGACCTACAAGATAAGgttaggaagt ... ttgtctgcagGTTTCTAGTGTCAATAGGATACCTAAACCAAAACCCAAGATAGAAAAGAAA
EST: CTTTCACATCTGAAGAAGTCTACGAAAAAGTTCTGGACCTACAAGATAAG GTTTCTAGTGTCAATAGGATACCTAAACCAAAACCCAAGATAGAAAAGAAAEST: gi|86855845|gb|CI271064.1|CI271064
genomic: CTTTCACATCTGAAGAAGTCTACGAAAAAGTTCTGGACCTACAAGATAAGgttaggaagt ... ttgtctgcagGTTTCTAGTGTCAATAGGATACCTAAACCAAAACCCAAGATAGAAAAGAAA
EST: CTTTCACATCTGAAGAAGTCTACGAAAAAGTTCTGGACCTACAAGATAAG GTTTCTAGTGTCAATAGGATACCTAAACCNAAACCCAAGATAGAAAAGAAAEST: gi|29673174|gb|CB669449.1|CB669449
genomic: CTTTCACATCTGAAGAAGTCTACGAAAAAGTTCTGGACCTACAAGATAAGgttaggaagt ... ttgtctgcagGTTTCTAGTGTCAATAGGATACCTAAACCAAAACCCAAGATAGAAAAGAAA
EST: CTTTCACATCTGAAGAAGTCTACGAAAAAGTTCTGGACCTACAAGATAAG GTTTCTAGTGTCAATAGGATACCTAAACCAAAACCCAAGATAGAAAAGAAAEST: gi|27576406|gb|CA999100.1|CA999100
genomic: CTTTCACATCTGAAGAAGTCTACGAAAAAGTTCTGGACCTACAAGATAAGgttaggaagt ... ttgtctgcagGTTTCTAGTGTCAATAGGATACCTAAACCAAAACCCAAGATAGAAAAGAAA
EST: CTTTCACATCTGAAGAAGTCTACGAAAAAGTTCTGGACCTACAAGATAAG GTTTCTAGTGTCAATAGGATACCTAAACCAAAACCCAAGATAGAAAAGAAAEST: gi|58663600|gb|CK052286.1|CK052286
genomic: CTTTCACATCTGAAGAAGTCTACGAAAAAGTTCTGGACCTACAAGATAAGgttaggaagt ... ttgtctgcagGTTTCTAGTGTCAATAGGATACCTAAACCAAAACCCAAGATAGAAAAGAAA
EST: CTTTCACATCTGAAGAAGTCTACGAAAAAGTTCTGGACCTACAAGATAAG GTTTCTAGTGTCAATAGGATACCTAAACCAAAACCCAAGATAGAAAAGAAAEST: gi|33800174|gb|CF325951.1|CF325951
genomic: CTTTCACATCTGAAGAAGTCTACGAAAAAGTTCTGGACCTACAAGATAAGgttaggaagt ... ttgtctgcagGTTTCTAGTGTCAATAGGATACCTAAACCAAAACCCAAGATAGAAAAGAAA
EST: CTTTCACATCTGAAGAAGTCTACGAAAAAGTTCTGGACCTACAAGATAAG GTTTCTAGTGTCAATAGGATACCTAAACCAAAACCCAAGATAGAAAAGAAA
genomic: CTTTCACATCTGAAGAAGTCTACGAAAAAGTTCTGGACCTACAAGATAAGgttaggaagt ... ttgtctgcagGTTTCTAGTGTCAATAGGATACCTAAACCAAAACCCAAGATAGAAAAGAAA
aatatgcacatgtttcaccgctctcaaaacattggggattcatctttgtctgcagGTTTCTAGTGTCAATAGGATACCTAAACCAAAACCCAAGATAGAAAAGAAACCTCCCAAGGAAGAAGAGTCTGCTAACAAAGAGAAAACTGACTCTTCGG
ttcatcttt CT-rich tract
aaaacatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttaggaagttcatattaagattctagaataatatgcacatgtttcaccgctctcaaaacattggggattcatctttgtctgcagGTTTCTAGTGTCAATAGGATACCTAAACCAAAACCCAAGATAGAAAAGAAACCTCCCAAGGAAGAAGAGTCTGCTAACAAAGAGAAAACTGACTCTTCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA