1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtattaatcacacgtatccccaaattttactagttgaattattaccctcagagtaaatttactcaacagctgctatcattgcttttatgaaaggaaaccaaaagattctaattggattttatttccagaaactcaaactatataaatatatatgatattcatcggtcagtctacttatattatattatgtaactcgtcagGTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAG
species | Oryza sativa |
transcript | LOC_Os12g15470.2 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GGAGTTATTGATTCATGGAGACCGTGGCACCTGAATGGCCAAGTTTCTGG GTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAGEST: gi|88849809|gb|CI001515.1|CI001515
genomic: GGAGTTATTGATTCATGGAGACCGTGGCACCTGAATGGCCAAGTTTCTGGgtattaatca ... aactcgtcagGTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAG
EST: GGAGTTATTGATTCATGGAGACCGTGGCACCTGAATGGCCAAGTTTCTGG GTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAGEST: gi|29638179|gb|CB643188.1|CB643188
genomic: GGAGTTATTGATTCATGGAGACCGTGGCACCTGAATGGCCAAGTTTCTGGgtattaatca ... aactcgtcagGTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAG
EST: GGAGTTATTGATTCATGGAGACCGTGGCACCTGAATGGCCAAGTTTCTGG GTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAGEST: gi|88484642|gb|CI421913.1|CI421913
genomic: GGAGTTATTGATTCATGGAGACCGTGGCACCTGAATGGCCAAGTTTCTGGgtattaatca ... aactcgtcagGTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAG
EST: ACCGTGGCACCTGAATGGCCAAGTTTCTGG GTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAGEST: gi|86862301|gb|CI330790.1|CI330790
genomic: ACCGTGGCACCTGAATGGCCAAGTTTCTGGgtattaatca ... aactcgtcagGTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAG
EST: GGAGTTATTGATTCATGGAGACCGTGGCACCTGAATGGCCAAGTTTCTGG GTACACCCAAGGATATGAACATGGCCTCACCCTTGCTACCATTAAGEST: gi|86501069|gb|CI143702.1|CI143702
genomic: GGAGTTATTGATTCATGGAGACCGTGGCACCTGAATGGCCAAGTTTCTGGgtattaatca ... aactcgtcagGTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAG
EST: GGAGTTATTGATTCATGGAGACCGTGGCACCTGAATGGCCAAGTTTCTGG GTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAGEST: gi|86485628|gb|CI128261.1|CI128261
genomic: GGAGTTATTGATTCATGGAGACCGTGGCACCTGAATGGCCAAGTTTCTGGgtattaatca ... aactcgtcagGTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAG
EST: GGAGTTATTGATTCATGGAGACCGTGGCACCTGAATGGCCAAGTTTCTGG GTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAGEST: gi|88903221|gb|CI088759.1|CI088759
genomic: GGAGTTATTGATTCATGGAGACCGTGGCACCTGAATGGCCAAGTTTCTGGgtattaatca ... aactcgtcagGTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAG
EST: GGAGTTATTGATTCATGGAGACCGTGGCACCTGAATGGCCAAGTTTCTGG GTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAGEST: gi|86537559|gb|CI177765.1|CI177765
genomic: GGAGTTATTGATTCATGGAGACCGTGGCACCTGAATGGCCAAGTTTCTGGgtattaatca ... aactcgtcagGTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAG
EST: GGAGTTATTGATTCATGGAGACCGTGGCACCTGAATGGCCAAGTTTCTGG GTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAGEST: gi|89166421|gb|CI103511.1|CI103511
genomic: GGAGTTATTGATTCATGGAGACCGTGGCACCTGAATGGCCAAGTTTCTGGgtattaatca ... aactcgtcagGTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAG
EST: GGAGTTATTGATTCATGGAGACCGTGGCACCTGAATGGCCAAGTTTCTGG GTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAGEST: gi|29644492|gb|CB649499.1|CB649499
genomic: GGAGTTATTGATTCATGGAGACCGTGGCACCTGAATGGCCAAGTTTCTGGgtattaatca ... aactcgtcagGTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAG
EST: GGAGTTATTGATTCATGGAGACCGTGGCACCTGAATGGCCAAGTTTCTGG GTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAGEST: gi|29668082|gb|CB664357.1|CB664357
genomic: GGAGTTATTGATTCATGGAGACCGTGGCACCTGAATGGCCAAGTTTCTGGgtattaatca ... aactcgtcagGTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAG
EST: GGAGTTATTGATTCATGGAGACCGTGGCACCTGAATGGCCAAGTTTCTGG GTACACCCAAGGATATGAACATGGCCTCACCTTTGTTACCATTAAGEST: gi|86883893|gb|CI328817.1|CI328817
genomic: GGAGTTATTGATTCATGGAGACCGTGGCACCTGAATGGCCAAGTTTCTGGgtattaatca ... aactcgtcagGTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAG
EST: GGAGTTATTGATTCATGGAGACCGTGGCACCTGAATGGCCAAGTTTCTGG GTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAGEST: gi|88245431|gb|CI245280.1|CI245280
genomic: GGAGTTATTGATTCATGGAGACCGTGGCACCTGAATGGCCAAGTTTCTGGgtattaatca ... aactcgtcagGTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAG
EST: GGAGTTATTGATTCATGGAGACCGTGGCACCTGAATGGCCAAGTTTCTGG GTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAGEST: gi|29659837|gb|CB656112.1|CB656112
genomic: GGAGTTATTGATTCATGGAGACCGTGGCACCTGAATGGCCAAGTTTCTGGgtattaatca ... aactcgtcagGTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAG
EST: GGAGTTATTGATTCATGGAGACCGTGGCACCTGAATGGCCAAGTTTCTGG GTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAGEST: gi|86899737|gb|CI327554.1|CI327554
genomic: GGAGTTATTGATTCATGGAGACCGTGGCACCTGAATGGCCAAGTTTCTGGgtattaatca ... aactcgtcagGTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAG
EST: GAGTTATTGATTCATGGAGACCGTGGCACCTGAATGGCCAAGGTTTCTGG GTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAGEST: gi|88957594|gb|CI011523.1|CI011523
genomic: GAGTTATTGATTCATGGAGACCGTGGCACCTGAATGGCCAA-GTTTCTGGgtattaatca ... aactcgtcagGTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAG
EST: GGAGTTATTGATTCATGGAGACCGTGGCACCTGAATGGCCAAGTTTCTGG GTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAGEST: gi|88901595|gb|CI001703.1|CI001703
genomic: GGAGTTATTGATTCATGGAGACCGTGGCACCTGAATGGCCAAGTTTCTGGgtattaatca ... aactcgtcagGTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAG
EST: GGAGTTATTGATTCATGGAGACCGTGGCACCTGAATGGCCAAGTTTCTGG GTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAGEST: gi|86594292|gb|CI251164.1|CI251164
genomic: GGAGTTATTGATTCATGGAGACCGTGGCACCTGAATGGCCAAGTTTCTGGgtattaatca ... aactcgtcagGTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAG
EST: GGAGTTATTGATTCATGGAGACCGTGGCACCTGAATGGCCAAGTTTCTGG GTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAGEST: gi|88248338|gb|CI248187.1|CI248187
genomic: GGAGTTATTGATTCATGGAGACCGTGGCACCTGAATGGCCAAGTTTCTGGgtattaatca ... aactcgtcagGTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAG
EST: GGAGTTATTGATTCATGGAGACCGTGGCACCTGAATGGCCAAGTTTCTGG GTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAGEST: gi|86482898|gb|CI125531.1|CI125531
genomic: GGAGTTATTGATTCATGGAGACCGTGGCACCTGAATGGCCAAGTTTCTGGgtattaatca ... aactcgtcagGTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAG
EST: GGAGTTATTGATTCATGGAGACCGTGGCACCTGAATGNCCAAGTTTCTGG GTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAGEST: gi|86482776|gb|CI125409.1|CI125409
genomic: GGAGTTATTGATTCATGGAGACCGTGGCACCTGAATGGCCAAGTTTCTGGgtattaatca ... aactcgtcagGTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAG
EST: GGAGTTATTGATTCATGGAGACCGTGGCACCTGAATGGCCAAGTTTCTGG GTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAGEST: gi|86259349|gb|CI008026.1|CI008026
genomic: GGAGTTATTGATTCATGGAGACCGTGGCACCTGAATGGCCAAGTTTCTGGgtattaatca ... aactcgtcagGTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAG
EST: GGAGTTATTGATTCATGGAGACCGTGGCACCTGAATGGCCAAGTTTCTGG GTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAGEST: gi|29661784|gb|CB658059.1|CB658059
genomic: GGAGTTATTGATTCATGGAGACCGTGGCACCTGAATGGCCAAGTTTCTGGgtattaatca ... aactcgtcagGTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAG
EST: GGAGTTATTGATTCATGGAGACCGTGGCACCTGAATGGCCAAGTTTCTGG GTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAGEST: gi|86842643|gb|CI341788.1|CI341788
genomic: GGAGTTATTGATTCATGGAGACCGTGGCACCTGAATGGCCAAGTTTCTGGgtattaatca ... aactcgtcagGTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAG
EST: GGAGTTATTGATTCATGGAGACCGTGGCACCTGAATGGCCAAGTTTCTGG GTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAGEST: gi|33684072|gb|CF312311.1|CF312311
genomic: GGAGTTATTGATTCATGGAGACCGTGGCACCTGAATGGCCAAGTTTCTGGgtattaatca ... aactcgtcagGTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAG
EST: GGAGTTATTGATTCATGGAGACCGTGGCACCTGAATGGCCAAGTTTCTGG GTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAGEST: gi|88995442|gb|CI022765.1|CI022765
genomic: GGAGTTATTGATTCATGGAGACCGTGGCACCTGAATGGCCAAGTTTCTGGgtattaatca ... aactcgtcagGTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAG
EST: GGAGTTATTGATTCATGGAGACCGTGGCACCTGAATGGCCAAGTTTCTGG GTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAG
genomic: GGAGTTATTGATTCATGGAGACCGTGGCACCTGAATGGCCAAGTTTCTGGgtattaatca ... aactcgtcagGTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAG
atatatatgatattcatcggtcagtctacttatattatattatgtaactcgtcagGTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAG
atgtaac putative branch site (score: 3)
tctacttatattatat TA-rich tract