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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtttgtctgaccagtggctaaattatctgtctgactatttgaatacagacgttttctactgaaatgaattcatcaaaatgttttgagattatgtaatgttgtgagtgagagcatctcctcttgttagcatcacaattttatctacctgtatcttccccagGGCGAAGAGTTTGTCAAGCTTTTACATGGCAGCACTGTTCCTCACACGCGCCATGTCGTGGGATCAAATTACTGCTTCATGAATGTCTTCGAGGACAGGA

Basic information

species Oryza sativa
transcript LOC_Os10g35170.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g35170.1 (Oryza sativa), 3'ss of exon 12
lower sequence: GRMZM2G038848_T02 (Zea mays), 3'ss of exon 12
gtttgtttgtctgacca-gt-ggctaaattatctgtctgactatttgaatacagacgttttctactgaaatgaattcatcaaaatgttttgagattatgtaatgttgtgagtgagagcatctcctcttgttagcatcacaattttatctac-ctgtatcttccccagGGCGAAGAGTTTGTCAAGCTTTTACATGGCAGCACTGTTCCTCACACGCGCCATGTCGTGGGATCAAATTACTGCTTCATGAATGTCTTCGAGGACAGGA
||||||||  || |||| || |||||||||||      ||| | ||    |    | |  | |  | |  |||| |||||||  |||  || | || || | |||     ||       | | ||||||||||| ||| | ||   ||  |  ||||||||  | ||   ||||| ||||||||||| |||||||| |||| |||||||  |||  ||||||| |||||||||||||||||||||||||||||||  ||||| || |
gtttgtttacctaaccatgtaggctaaattat------gacaacttaggaaggaccatcattttttcac-tgaagtcatcaatctgtcgtgtgtttttgaagtgt-----gtagagaattatactcttgttagc-tcagagttcattcgtcattgtatcttttc-agAATGAAGAATTTGTCAAGCTGTTACATGGTAGCAATGTTCCTTGCACAAGCCATGTTGTGGGATCAAATTACTGCTTCATGAATGTCTATGAGGATAGAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgagagcatctcctcttgttagcatcacaattttatctacctgtatcttccccagGGCGAAGAGTTTGTCAAGCTTTTACATGGCAGCACTGTTCCTCACACGCGCCATGTCGTGGGATCAAATTACTGCTTCATGAATGTCTTCGAGGACAGGA
                                       cctgtatcttcccc  CT-rich tract
                            aattttatcta  TA-rich tract