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gtttgatctataggcgtcgatgttttgtacaatattctgctagaattgcaagcagcatacaggtttttgaagttatcaaccttattataattctttcagAGTGAAGCTGAATTGCTCGCCGAGAAAAGATGCGTTGCCCATCTTACTGGAGAG
species | Oryza sativa |
transcript | LOC_Os08g44810.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: TAGTTAAAGATGTGGCAATGGACGATTTCCTCTGGGAACGGATAAAAAAG AGTGAAGCTGAATTGCTCGCCGAGAAAAGATGCGTTGCCCATCTTACTGGAEST: gi|86901993|gb|CI300232.1|CI300232
genomic: TAGTTAAAGATGTGGCAATGGACGATTTCCTCTGGGAACGGATAAAAAAGgtttgatcta ... attctttcagAGTGAAGCTGAATTGCTCGCCGAGAAAAGATGCGTTGCCCATCTTACTGGA
EST: TAGTTAAAGATGTGGCAATGGACGATTTCCTCTGGGAACGGATAACAAAG AGTGAAGCTGAATTGCTCGCCGAGAAAAGATGCGEST: gi|3763525|gb|AU030277.1|AU030277
genomic: TAGTTAAAGATGTGGCAATGGACGATTTCCTCTGGGAACGGATAAAAAAGgtttgatcta ... attctttcagAGTGAAGCTGAATTGCTCGCCGAGAAAAGATGCG
EST: TAGTTAAAGATGTGGCA-TGGACGATT-CCTCTGGGA-CGGATAAAAA-G AGTGA-GCTGAEST: gi|89169357|gb|CI038366.1|CI038366
genomic: TAGTTAAAGATGTGGCAATGGACGATTTCCTCTGGGAACGGATAAAAAAGgtttgatcta ... attctttcagAGTGAAGCTGA
EST: TAGTTAAAGATGTGGCAATGGACGATTTCCTCTGGGAACGGATAAAAAAG AGTGAAGCTGAATTGCTCGCCGAGAAAAGATGCGTTGCCCATCTTACTGGAEST: gi|29613418|gb|CB618431.1|CB618431
genomic: TAGTTAAAGATGTGGCAATGGACGATTTCCTCTGGGAACGGATAAAAAAGgtttgatcta ... attctttcagAGTGAAGCTGAATTGCTCGCCGAGAAAAGATGCGTTGCCCATCTTACTGGA
EST: TAGTTAAAGATGTGGCAATGGACGATTTCCTCTGGGAACGGATAAAAAAG AGTGAAGCTGAATTGCTCGCCGAGAAAAGATGCGTTGCCCATCTTACTGGAEST: gi|29677718|gb|CB673993.1|CB673993
genomic: TAGTTAAAGATGTGGCAATGGACGATTTCCTCTGGGAACGGATAAAAAAGgtttgatcta ... attctttcagAGTGAAGCTGAATTGCTCGCCGAGAAAAGATGCGTTGCCCATCTTACTGGA
EST: TAGTTAAAGATGTGGCAATGGACGATTTCCTCTGGGAACGGATAAAAAAG AGTGAAGCTGAATTGCTCGCCGAGAAAAGATGCGTTGCCCATCTTACTGGA
genomic: TAGTTAAAGATGTGGCAATGGACGATTTCCTCTGGGAACGGATAAAAAAGgtttgatcta ... attctttcagAGTGAAGCTGAATTGCTCGCCGAGAAAAGATGCGTTGCCCATCTTACTGGA
attgcaagcagcatacaggtttttgaagttatcaaccttattataattctttcagAGTGAAGCTGAATTGCTCGCCGAGAAAAGATGCGTTGCCCATCTTACTGGAGAG
ttctttc CT-rich tract
ttattataattctttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgatctataggcgtcgatgttttgtacaatattctgctagaattgcaagcagcatacaggtttttgaagttatcaaccttattataattctttcagAGTGAAGCTGAATTGCTCGCCGAGAAAAGATGCGTTGCCCATCTTACTGGAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA