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gtggttgttacgctgtagtgtctgcatccatatatgtcttgagtaatatggtttggtatttgaatatctttgtacttcttttggcagGTTAGTGGACTGGTGTGTTGACTATTGTGACCTCCAGAACAACATAAGGATAACAACCAAGCCTATAAATCATCAAATATTTTACGCAAGCTGTCAG
species | Oryza sativa |
transcript | LOC_Os06g47350.2 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: TCTCGGGCAAGGTTCATTTCTGCTGATACGGTGGTTGGTATACTCAAAAG GTTAGTGGACTGGTGTGTTGACTATTGTGACCTCCAGAACAACATAGGGATEST: gi|58668152|gb|CK056838.1|CK056838
genomic: TCTCGGGCAAGGTTCATTTCTGCTGATACGGTGGTTGGTATACTCAAAAGgtggttgtta ... cttttggcagGTTAGTGGACTGGTGTGTTGACTATTGTGACCTCCAGAACAACATAAGGAT
EST: TCTCGGGCAAGGTTCATTTCTGCTGATACGGTGGTTGGTATACTCAAAAG GTTAGTGGACTGGTGTGTTGACTATTGTGACCTCCAGAACAACATAGGGATEST: gi|218504600|gb|FG967431.1|FG967431
genomic: TCTCGGGCAAGGTTCATTTCTGCTGATACGGTGGTTGGTATACTCAAAAGgtggttgtta ... cttttggcagGTTAGTGGACTGGTGTGTTGACTATTGTGACCTCCAGAACAACATAAGGAT
EST: CATTTCTGCTGATACGG-GG-TGGTATACTCAAAAG GTTAGTGGACTGGTGTGTTGACTATTGTGACCTCCAGAACAACATAGGGATEST: gi|33812524|gb|CF332150.1|CF332150
genomic: CATTTCTGCTGATACGGTGGTTGGTATACTCAAAAGgtggttgtta ... cttttggcagGTTAGTGGACTGGTGTGTTGACTATTGTGACCTCCAGAACAACATAAGGAT
EST: TCTCGGGC-AGGTTCATTTCTGCTGATACGGTGGTTGGTATACTCAAAAG GTTAGTGGACTGGTGTGTTGACTATTGTGACCTCCAGAACAACATAAGGATEST: gi|66922574|gb|CX109422.1|CX109422
genomic: TCTCGGGCAAGGTTCATTTCTGCTGATACGGTGGTTGGTATACTCAAAAGgtggttgtta ... cttttggcagGTTAGTGGACTGGTGTGTTGACTATTGTGACCTCCAGAACAACATAAGGAT
EST: TCTCGGGCAAGGTTCATTTCTGCTGATACGGTGGTTGGTATACTCAAAAG GTTAGTGGACTGGTGTGTTGACTATTGTGACCTCCAGAACAACATAGGGATEST: gi|29628119|gb|CB633130.1|CB633130
genomic: TCTCGGGCAAGGTTCATTTCTGCTGATACGGTGGTTGGTATACTCAAAAGgtggttgtta ... cttttggcagGTTAGTGGACTGGTGTGTTGACTATTGTGACCTCCAGAACAACATAAGGAT
EST: TCTCGGGCAAGGTTCATTTCTGCTGATACGGTGGTTGGTATACTCAAAAG GTTAGTGGACTGGTGTGTTGACTATTGTGACCTCCAGAACAACATANGGATEST: gi|29689750|gb|CB686025.1|CB686025
genomic: TCTCGGGCAAGGTTCATTTCTGCTGATACGGTGGTTGGTATACTCAAAAGgtggttgtta ... cttttggcagGTTAGTGGACTGGTGTGTTGACTATTGTGACCTCCAGAACAACATAAGGAT
EST: CTCGGGNCA-GGTTCATTTCTGCTGATACGGTGGTTGGTATACTCAAAAG GTTAGTGGACTGGTGTGTTGACTAEST: gi|58668829|gb|CK057515.1|CK057515
genomic: CTCGGG-CAAGGTTCATTTCTGCTGATACGGTGGTTGGTATACTCAAAAGgtggttgtta ... cttttggcagGTTAGTGGACTGGTGTGTTGACTA
EST: TCTCGGGCAA-GTTCATTTCTGCTGATACGGTGGTTGGTATACTCAAAAG GTTAGTGGACTGGTGTGTTGACTATTGTGACCTCCAGAACAACATAGGGATEST: gi|58680790|gb|CK069477.1|CK069477
genomic: TCTCGGGCAAGGTTCATTTCTGCTGATACGGTGGTTGGTATACTCAAAAGgtggttgtta ... cttttggcagGTTAGTGGACTGGTGTGTTGACTATTGTGACCTCCAGAACAACATAAGGAT
EST: GGGCAAGGTTCATTTCTGCTGATACGGTGGTTGGTATACTCAAAAG GTTAGTGGACTGGTGTGTTGACTATTGTGACCTCCAGAACAACATAGGGATEST: gi|218492292|gb|FG954140.1|FG954140
genomic: GGGCAAGGTTCATTTCTGCTGATACGGTGGTTGGTATACTCAAAAGgtggttgtta ... cttttggcagGTTAGTGGACTGGTGTGTTGACTATTGTGACCTCCAGAACAACATAAGGAT
EST: TCTCGGGCAAGGTTCATTTCTGCTGATACGGTGGTTGGTATACTCAAAAG GTTAGTGGACTGGTGTGTTGACTATTGTGACCTCCAGAACAACATAGGGAT
genomic: TCTCGGGCAAGGTTCATTTCTGCTGATACGGTGGTTGGTATACTCAAAAGgtggttgtta ... cttttggcagGTTAGTGGACTGGTGTGTTGACTATTGTGACCTCCAGAACAACATAAGGAT
tatgtcttgagtaatatggtttggtatttgaatatctttgtacttcttttggcagGTTAGTGGACTGGTGTGTTGACTATTGTGACCTCCAGAACAACATAAGGATAACAACCAAGCCTATAAATCATCAAATATTTTACGCAAGCTGTCAG
tctttgtacttctttt CT-rich tract
tatttgaatatcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtggttgttacgctgtagtgtctgcatccatatatgtcttgagtaatatggtttggtatttgaatatctttgtacttcttttggcagGTTAGTGGACTGGTGTGTTGACTATTGTGACCTCCAGAACAACATAAGGATAACAACCAAGCCTATAAATCATCAAATATTTTACGCAAGCTGTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG