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gtattgaaattgaaaagtactgtttataatttttattagcctatccatgcacattaacaatgacctttgcaactttagGGCCTGATGACTCCTATTATAAGAAATGCAGATCAAAAGACTATATCAGCAATATCCTCAGAG
species | Oryza sativa |
transcript | LOC_Os06g30460.3 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: CCCAGAAGTGTGTTTCAGTTGATATATCTATCGCAGTTGCTACAGAGAAG GGCCTGATGACTCCTATTATEST: gi|58692196|gb|CK080883.1|CK080883
genomic: CCCAGAAGTGTGTTTCAGTTGATATATCTATCGCAGTTGCTACAGAGAAGgtattgaaat ... gcaactttagGGCCTGATGACTCCTATTAT
EST: CCCAGAAGTGTGTTTCAGTTGATATATCTATCGCAGTTGCTACAGAGAAG GGCCTGATGACTCCTATTATAAGAAATGCAGATCAAAAGACTATATCAGCAEST: gi|27578288|gb|CB000983.1|CB000983
genomic: CCCAGAAGTGTGTTTCAGTTGATATATCTATCGCAGTTGCTACAGAGAAGgtattgaaat ... gcaactttagGGCCTGATGACTCCTATTATAAGAAATGCAGATCAAAAGACTATATCAGCA
EST: CCCAGAAGTGTGTTTCAGTTGATATATCTATCGCAGTTGCTACAGAGAAG GGCCTGATGACTCCTATTATAAGAAATGCAGAATCAAA-GACTATATCAGCEST: gi|88849307|gb|CI087829.1|CI087829
genomic: CCCAGAAGTGTGTTTCAGTTGATATATCTATCGCAGTTGCTACAGAGAAGgtattgaaat ... gcaactttagGGCCTGATGACTCCTATTATAAGAAATGCAGA-TCAAAAGACTATATCAGC
EST: CCCAGAAGTGTGTTTCGGTTGATATATCTATCGCAGTTGCTACAGAGAAG GGCCTGATGACTCCTATTATAAGAAATGCAGATCAAAAGACTATATCAGCAEST: gi|58678110|gb|CK066797.1|CK066797
genomic: CCCAGAAGTGTGTTTCAGTTGATATATCTATCGCAGTTGCTACAGAGAAGgtattgaaat ... gcaactttagGGCCTGATGACTCCTATTATAAGAAATGCAGATCAAAAGACTATATCAGCA
EST: CCCAGAAGTGTGTTTCAGTTGATATATCTATCGCAGTTGCTACAGAGAAG GGCCTGATGACTCCTATTATAAGAAATGCAGATCAAAAGACTATATCAGCAEST: gi|218482631|gb|FG947596.1|FG947596
genomic: CCCAGAAGTGTGTTTCAGTTGATATATCTATCGCAGTTGCTACAGAGAAGgtattgaaat ... gcaactttagGGCCTGATGACTCCTATTATAAGAAATGCAGATCAAAAGACTATATCAGCA
EST: CCCAGAAGTGTGTTTCAGTTGATATATCTATCGCAGTTGCTACAGAGAAG GGCCTGATGACTCCTATTATAAGAAATGCAGATCAAAAGACTATATCAGCA
genomic: CCCAGAAGTGTGTTTCAGTTGATATATCTATCGCAGTTGCTACAGAGAAGgtattgaaat ... gcaactttagGGCCTGATGACTCCTATTATAAGAAATGCAGATCAAAAGACTATATCAGCA
ttataatttttattagcctatccatgcacattaacaatgacctttgcaactttagGGCCTGATGACTCCTATTATAAGAAATGCAGATCAAAAGACTATATCAGCAATATCCTCAGAG
cattaac putative branch site (score: 2)
cctttgc putative PPT
atttttatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattgaaattgaaaagtactgtttataatttttattagcctatccatgcacattaacaatgacctttgcaactttagGGCCTGATGACTCCTATTATAAGAAATGCAGATCAAAAGACTATATCAGCAATATCCTCAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA