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gtattgatgctgttccattctgttcaggtattgcttcgttctagctactagtttctaatgtagtgccttgactgatctttgcatgaagGTGGCATCTTCTGATAATCTACTAAAAATTTATCGAAGATGATTTTGGGACTAATGTTATTTATCGAAGACGATTTTGGGACTAATGTTAGCCATTGTGC
species | Oryza sativa |
transcript | LOC_Os04g58630.2 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GCAGTGGATACTTCACCACTGGTTTCCTTTTGNNNNNNNGAAGGGATCAG GTGGCATCTTCTGATAATCTACTAAAAATTTATCGAAGATGATTTTGGGACEST: gi|29670082|gb|CB666357.1|CB666357
genomic: GCAGTGGATACTTCACCACTGGTTTCCTTTTGTTTTTTTGAAGGGATCAGgtattgatgc ... ttgcatgaagGTGGCATCTTCTGATAATCTACTAAAAATTTATCGAAGATGATTTTGGGAC
EST: GCAGTGGATACTTCACCACTGGTTTCCTTTTGNNNNNNNGAAGGGATCAG GTGGCATCTTCTGATAATCTACTAAAAATTTATCGAAGATGATTTTGGGACEST: gi|88967163|gb|CI392125.1|CI392125
genomic: GCAGTGGATACTTCACCACTGGTTTCCTTTTGTTTTTTTGAAGGGATCAGgtattgatgc ... ttgcatgaagGTGGCATCTTCTGATAATCTACTAAAAATTTATCGAAGATGATTTTGGGAC
EST: GCAGTGGATACTTCACCACTGGTTTCCTTTTGNNNNNNNGAAGGGATCAG GTGGCATCTTCTGATAATCTACTAAAAATTTATCGAAGATGATTTTGGGACEST: gi|29672951|gb|CB669226.1|CB669226
genomic: GCAGTGGATACTTCACCACTGGTTTCCTTTTGTTTTTTTGAAGGGATCAGgtattgatgc ... ttgcatgaagGTGGCATCTTCTGATAATCTACTAAAAATTTATCGAAGATGATTTTGGGAC
EST: GCAGTGGATACTTCACCACTGGTTTCCTTTTGNNNNNNNGAAGGGATCAG GTGGCATCTTCTGATAATCTACTAAAAATTTATCGAAGATGATTTTGGGACEST: gi|88971750|gb|CI388988.1|CI388988
genomic: GCAGTGGATACTTCACCACTGGTTTCCTTTTGTTTTTTTGAAGGGATCAGgtattgatgc ... ttgcatgaagGTGGCATCTTCTGATAATCTACTAAAAATTTATCGAAGATGATTTTGGGAC
EST: GCAGTGGATACTTCACCACTGGTTTCCTTTTGNNNNNNNGAAGGGATCAG GTGGCATCTTCTGATAATCTACTAAAAATTTATCGAAGATGATTTTGGGACEST: gi|88537022|gb|CI464830.1|CI464830
genomic: GCAGTGGATACTTCACCACTGGTTTCCTTTTGTTTTTTTGAAGGGATCAGgtattgatgc ... ttgcatgaagGTGGCATCTTCTGATAATCTACTAAAAATTTATCGAAGATGATTTTGGGAC
EST: GCAGTGGATACTTCACCACTGGTTTCCTTTTGNNNNNNNGAAGGGATCAG GTGGCATCTTCTGATAATCTACTAAAAATTTATCGAAGATGATTTTGGGAC
genomic: GCAGTGGATACTTCACCACTGGTTTCCTTTTGTTTTTTTGAAGGGATCAGgtattgatgc ... ttgcatgaagGTGGCATCTTCTGATAATCTACTAAAAATTTATCGAAGATGATTTTGGGAC
cttcgttctagctactagtttctaatgtagtgccttgactgatctttgcatgaagGTGGCATCTTCTGATAATCTACTAAAAATTTATCGAAGATGATTTTGGGACTAATGTTATTTATCGAAGACGATTTTGGGACTAATGTTAGCCATTGTGC
tctttgc CT-rich tract
tttctaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattgatgctgttccattctgttcaggtattgcttcgttctagctactagtttctaatgtagtgccttgactgatctttgcatgaagGTGGCATCTTCTGATAATCTACTAAAAATTTATCGAAGATGATTTTGGGACTAATGTTATTTATCGAAGACGATTTTGGGACTAATGTTAGCCATTGTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA