Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatcatcactttatgctacctgtacatccactgaatagcttaatttgttctctcagaaatttgagagaaatgagtactttgcttaatcttcccatattggctgtttttatacatgttctcagaaattactgttgctgcgaatgtggtaaattggtaatggaaggggcaattgacacctcttatttctgttttcagGAGGCAAAAGAACTCTGGGAGAAAATTCAACAACGACAAGGGCTGAACAAGTGGCGGCCAGACCTAGAAGAAGAGTACGAAGATCAGGAGGGAAATATCT

Basic information

species Oryza sativa
transcript LOC_Os03g50850.2
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g50850.1 (Oryza sativa), 3'ss of exon 11
lower sequence: GRMZM2G178227_T01 (Zea mays), 3'ss of exon 11
gtaaatcatcactttatgctacctgtacatccactgaatagcttaatttgttctctcagaaatttgagagaaatgagtactttgcttaatcttcccatattggctgtttttatacatgttctcagaaattactgttgctgcgaatgtggtaaattggtaatggaaggggcaattgacacctcttatttctgttttcagGAGGCAAAAGAACTCTGGGAGAAAATTCAACAACGACAAGGGCTGAACAAGTGGCGGCCAGACCTAGAAGAAGAGTACGAAGATCAGGAGGGAAATATCT
                                                                                            |   | |  |  ||       |    |       |  || | |||          |||  ||||   || | | | ||  || |||    ||||||||  | ||||||||| ||||  ||||||||||||||||||  |||||||||| |||| |||||||||||||||||||| |||||||| ||||||||||| || || ||||
-------------------------------------------------------------------------------------------atttgaaacagaatgcaaaagaatgcatgtctgcca--tattcttgacattggc-cggtttattgtatattgtatgtgct-ttaaca---tttatttctactctcagGAGGCGAAAGCGCTCTGGGAGAAAATTCAAGCACGACAAGGGGTGAATAAGTGGCGGCCAGACCTAGAGGAAGAGTATGAAGATCAGGAAGGCAACATCT

upper sequence: LOC_Os03g50850.1 (Oryza sativa), 3'ss of exon 11
lower sequence: GLYMA04G41530.1 (Glycine max), 3'ss of exon 11
gtaaatcatcactttatgctacctgtacatccactgaatagcttaatttgttctctcagaaatttgagagaaatgagtactttgcttaatcttcccatattggctgtttttatacatgttctcagaaattactgttgctgcgaatgtggtaaattggtaatggaaggggcaattgacacctcttatttctgttttcagGAGGCAAAAGAACTCTGGGAGAAAATTCAACAACGACAAGGGCTGAACAAGTGGCGGCCAGACCTAGAAGAAGAGTACGAAGATCAGGAGGGAAATATCT
                                                                                                | |||   |||  || | | |  | |  ||   | | ||  ||     | |       ||  | |   ||      || |   || | ||      || ||||| ||||| ||||| ||| |||| || || ||| |||||||  ||||||||||||| || || ||||| |||||||| |||||  | || || || ||||
------------------------------------------------------------------------------------------------agattaagtgtggtttttctt--tgttggattctgcagtcccttttctttttaacccatgacatttatagtatatcttaaatgctatcatgctctgttgcagGAAGCAAAGGAACTTTGGAAGAAGATACAGCAAAGACAAGGAGTGAACAAGTGGCGCCCGGATCTAGAGGAAGAGTATGAAGACAAAGAAGGCAACATCT

upper sequence: LOC_Os03g50850.1 (Oryza sativa), 3'ss of exon 11
lower sequence: GLYMA06G13290.1 (Glycine max), 3'ss of exon 11
gtaaatcatcactttatgctacctgtacatccactgaatagcttaatttgttctctcagaaatttgagagaaatgagtactttgcttaatcttcccatattggctgtttttatacatgttctcagaaattactgttgctgcgaatgtggtaaattggtaatggaaggggcaattgacacctcttatttctgttttcagGAGGCAAAAGAACTCTGGGAGAAAATTCAACAACGACAAGGGCTGAACAAGTGGCGGCCAGACCTAGAAGAAGAGTACGAAGATCAGGAGGGAAATATCT
                                                                                     || |   ||| | |||   | | |   | |||| | | |  | | |||| ||  | |  ||  ||||    |||     | | |   ||           | ||||||  ||||| ||||| ||||| ||| |||| || || ||| |||||||  ||||||||||||| ||||| || || |||||||| |||||  | || || || ||||
---------------------------------------------------------------------------------aaaattgag--tccaaaatta--tatctgagtgcatggtttgattattaactggtgacgtgtgtgcagtaa--cagtatcattaagtgtggttt----------tctctgttg-cagGAAGCAAAGGAACTTTGGAAGAAGATACAGCAAAGACAAGGAGTGAACAAGTGGCGCCCAGATCTTGAGGAAGAGTATGAAGACAAAGAAGGCAACATCT

upper sequence: LOC_Os03g50850.1 (Oryza sativa), 3'ss of exon 11
lower sequence: Vv16s0098g00320.t01 (Vitis vinifera), 3'ss of exon 11
gtaaatcatcactttatgctacctgtacatccactgaatagcttaatttgttctctcagaaatttgagagaaatgagtactttgcttaatcttcccatattggctgtttttatacatgttctcagaaattactgttg--ctgcgaatgtggtaaattg-gtaatggaaggggcaattgacacctcttattt-ctgttttcagGAGGCAAAAGAACTCTGGGAGAAAATTCAACAACGACAAGGGCTGAACAAGTGGCGGCCAGACCTAGAAGAAGAGTACGAAGATCAGGAGGGAAATATCT
                                                                                                       ||  | | |  | | || |    ||| |||  |   || |   |||| ||| ||    | | | |      ||| |      |||| |  ||| | ||||| ||||| | ||| ||||||| ||| ||  |||| ||||| |||||||||||||| ||||| |||||||||||||| |||||  | ||||| || ||||
------------------------------------------------------------------------------------------------------acttgtatcactcgtattttttagaataacttatattctacatttgtgctaagttttacatttgtaaataggattaaggttgtttatatgttgtatgcagGAAGCAAAGGTACTGTGGGAGAGAATACAGGAACGGCAAGGACTGAACAAGTGGCGCCCAGATCTAGAAGAAGAGTATGAAGACAAAGAGGGCAACATCT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13420527|gb|AU174617.1|AU174617
EST:     GTCTTGGAATTCCTAATACTAAGAACTTCAATGAAATCACATCCATCCAG                         GAGGCAAAAGAACTCTGGGAGAAAATTCAACAACGACAAGGGCTGAACAAG
genomic: GTCTTGGAATTCCTAATACTAAGAACTTCAATGAAATCACATCCATCCAGgtaaatcatc ... ctgttttcagGAGGCAAAAGAACTCTGGGAGAAAATTCAACAACGACAAGGGCTGAACAAG
EST: gi|25806388|gb|CA762349.1|CA762349
EST:     GTCTTGGAATTCCTAATACTAAGAACTTCAATGAAATCACATCCATCCAG                         GAGGCAAAAGAACTCTGGGAGAAAATTCAACAACGACAAGGGCTGAACAAG
genomic: GTCTTGGAATTCCTAATACTAAGAACTTCAATGAAATCACATCCATCCAGgtaaatcatc ... ctgttttcagGAGGCAAAAGAACTCTGGGAGAAAATTCAACAACGACAAGGGCTGAACAAG
EST: gi|86540013|gb|CI180219.1|CI180219
EST:     GTCTTGGAATTCCTAATACTAAGAACTTCAATGAAATCACATCCATCCAG                         GAGGCAAAAGAACTCTGGGAGAAAATTCAACAACGACAAGGGCTGAACAAG
genomic: GTCTTGGAATTCCTAATACTAAGAACTTCAATGAAATCACATCCATCCAGgtaaatcatc ... ctgttttcagGAGGCAAAAGAACTCTGGGAGAAAATTCAACAACGACAAGGGCTGAACAAG
EST: gi|58030390|gb|CX727933.1|CX727933
EST:     GTCTTGGAATTCCTAATACTAAGAACTTCAATGAAATCACATCCATCCAG                         GAGGCAAAAGAACTCTGGGAGAAAATTCAACAACGACAAGGGCTGAACAAG
genomic: GTCTTGGAATTCCTAATACTAAGAACTTCAATGAAATCACATCCATCCAGgtaaatcatc ... ctgttttcagGAGGCAAAAGAACTCTGGGAGAAAATTCAACAACGACAAGGGCTGAACAAG
EST: gi|88273522|gb|CI393928.1|CI393928
EST:     GTCTTGGAATTCCTAATACTAAGAACTTCAATGAAATCACATCCATCCAG                         GAGGCAAAAGAACTCTGGGAGAAAATTCAACAACGACAAGGGCTGAACAAG
genomic: GTCTTGGAATTCCTAATACTAAGAACTTCAATGAAATCACATCCATCCAGgtaaatcatc ... ctgttttcagGAGGCAAAAGAACTCTGGGAGAAAATTCAACAACGACAAGGGCTGAACAAG
EST: gi|88966922|gb|CI379806.1|CI379806
EST:     GTCTTGGAATTCCTAATACTAAGAACTTCAATGAAATCACATCCATCCAG                         GAGGCAAAAGAACTCTGG-AGAAAATTCAACAACGACAAGTGCTGAACAAG
genomic: GTCTTGGAATTCCTAATACTAAGAACTTCAATGAAATCACATCCATCCAGgtaaatcatc ... ctgttttcagGAGGCAAAAGAACTCTGGGAGAAAATTCAACAACGACAAGGGCTGAACAAG
EST: gi|86846267|gb|CI339856.1|CI339856
EST:     GTCTTGGAATTCCTAATACTAAGAACTTCAATGAAATCACATCCATCCAG                         GAGGCAAAAGAACTCTGGGAGAAAATTCAACAACGACAAGGGCTGAACAAG
genomic: GTCTTGGAATTCCTAATACTAAGAACTTCAATGAAATCACATCCATCCAGgtaaatcatc ... ctgttttcagGAGGCAAAAGAACTCTGGGAGAAAATTCAACAACGACAAGGGCTGAACAAG
EST: gi|86869402|gb|CI346262.1|CI346262
EST:     GTCTTGGAATTCCTAATACTAAGAACTTCAATGAAATCACATCCATCCAG                         GAGGCAAAAGAACTCTGGGAGAAAATTCAACAACGACAAGGGCTGAACAAG
genomic: GTCTTGGAATTCCTAATACTAAGAACTTCAATGAAATCACATCCATCCAGgtaaatcatc ... ctgttttcagGAGGCAAAAGAACTCTGGGAGAAAATTCAACAACGACAAGGGCTGAACAAG
EST: gi|88478007|gb|CI415278.1|CI415278
EST:     CACATCCATCCAG                         GAGGCAAAAGAACTCTGGGAGAAAATTCAACAACGACAAGGGCTGAACAAG
genomic: CACATCCATCCAGgtaaatcatc ... ctgttttcagGAGGCAAAAGAACTCTGGGAGAAAATTCAACAACGACAAGGGCTGAACAAG
EST: gi|88283886|gb|CI405332.1|CI405332
EST:     CAATGAAATCACATCCATCCAG                         GAGGCAAAAGAACTCTGGGAGAAAATTCAACAACGACAAGGGCTGAACAAG
genomic: CAATGAAATCACATCCATCCAGgtaaatcatc ... ctgttttcagGAGGCAAAAGAACTCTGGGAGAAAATTCAACAACGACAAGGGCTGAACAAG
EST: gi|58030389|gb|CX727932.1|CX727932
EST:     GTCTTGGAATTCCTAATACTAAGAACTTCAATGAAATCACATCCATCCAG                         GAGGCAAAAGAACTCTGGGAGAAAATTCAACAACGACAAGGGCTGAACAAG
genomic: GTCTTGGAATTCCTAATACTAAGAACTTCAATGAAATCACATCCATCCAGgtaaatcatc ... ctgttttcagGAGGCAAAAGAACTCTGGGAGAAAATTCAACAACGACAAGGGCTGAACAAG
EST: gi|86889808|gb|CI333459.1|CI333459
EST:     GTCTTGGAATTCCTAATACTAAGAACTTCAATGAAATCACATCCATCCAG                         GAGGCAAAAGAACTCTGGGAGAAAATTCAACAACGACAAGGGCTGAACAAG
genomic: GTCTTGGAATTCCTAATACTAAGAACTTCAATGAAATCACATCCATCCAGgtaaatcatc ... ctgttttcagGAGGCAAAAGAACTCTGGGAGAAAATTCAACAACGACAAGGGCTGAACAAG
EST: gi|87039441|gb|CI194063.1|CI194063
EST:     GTCTTGGAATTCCTAATACTAAGAACTTCAATGAAATCACATCCATCCAG                         GAGGCAAAAGAACTCTGGGAGAAAATTCAACAACGACAAGGGCTGGACAAG
genomic: GTCTTGGAATTCCTAATACTAAGAACTTCAATGAAATCACATCCATCCAGgtaaatcatc ... ctgttttcagGAGGCAAAAGAACTCTGGGAGAAAATTCAACAACGACAAGGGCTGAACAAG
EST: gi|58683962|gb|CK072649.1|CK072649
EST:     GTCTTGGAATTCCTAATACTAAGAACTTCAATGAAATCACATCCATCCAG                         GAGGCAAAAGAACTCTGGGAGAAAATTCAACAACGACAAGGGCTGAACAAG
genomic: GTCTTGGAATTCCTAATACTAAGAACTTCAATGAAATCACATCCATCCAGgtaaatcatc ... ctgttttcagGAGGCAAAAGAACTCTGGGAGAAAATTCAACAACGACAAGGGCTGAACAAG
EST: gi|88840812|gb|CI080266.1|CI080266
EST:     GTCTTGGAATTCCTAATACTAAGAACTTCAATGAAATCACATCCATCCAG                         GAGGCAAAAGAACTCTGGGAGGAAATTCAACAACGACAAGGGCTGAACAAG
genomic: GTCTTGGAATTCCTAATACTAAGAACTTCAATGAAATCACATCCATCCAGgtaaatcatc ... ctgttttcagGAGGCAAAAGAACTCTGGGAGAAAATTCAACAACGACAAGGGCTGAACAAG
EST: gi|4714943|gb|AU056060.1|AU056060
EST:     ATACTAAGAACTTCAATGAAATCACATCCATCCAG                         GAGGCAAAAGAACTCTGGGAGAAAATTCAACANCGACAAGGGCTGAACAAN
genomic: ATACTAAGAACTTCAATGAAATCACATCCATCCAGgtaaatcatc ... ctgttttcagGAGGCAAAAGAACTCTGGGAGAAAATTCAACAACGACAAGGGCTGAACAAG
EST: gi|88440607|gb|CI552073.1|CI552073
EST:     CTAAGAACTTCAATGAAATCACATCCATCCAG                         GAGGCAAAAGAACTCTGGGAGAAAATTCAACAACGACAAGGGCTGAACAAG
genomic: CTAAGAACTTCAATGAAATCACATCCATCCAGgtaaatcatc ... ctgttttcagGAGGCAAAAGAACTCTGGGAGAAAATTCAACAACGACAAGGGCTGAACAAG
EST: gi|29625135|gb|CB630146.1|CB630146
EST:     GTCTTGGAATTCCTAATACTAAGAACTTCAATGAAATCACATCCATCCAG                         GAGGCAAAAGAACTCTGGGAGAAAATTCAACAACGACAAGGGCTGAACAAG
genomic: GTCTTGGAATTCCTAATACTAAGAACTTCAATGAAATCACATCCATCCAGgtaaatcatc ... ctgttttcagGAGGCAAAAGAACTCTGGGAGAAAATTCAACAACGACAAGGGCTGAACAAG
EST: gi|29664559|gb|CB660834.1|CB660834
EST:     GTCTTGGAATTCCTAATACTAAGAACTTCAATGAAATCACATCCATCCAG                         GAGGCAAAAGAACTCTGGGAGAAAATTCAACAACGACAAGGGCTGAACAAG
genomic: GTCTTGGAATTCCTAATACTAAGAACTTCAATGAAATCACATCCATCCAGgtaaatcatc ... ctgttttcagGAGGCAAAAGAACTCTGGGAGAAAATTCAACAACGACAAGGGCTGAACAAG
EST: gi|87021804|gb|CI277971.1|CI277971
EST:     GTCTTGGAATTCCTAATACTAAGAACTTCAATGAAATCACATCCATCCAG                         GAGGCAAAAGAACTCTGGGAGAAAATTCAACAACGACAAGGGCTGAACAAG
genomic: GTCTTGGAATTCCTAATACTAAGAACTTCAATGAAATCACATCCATCCAGgtaaatcatc ... ctgttttcagGAGGCAAAAGAACTCTGGGAGAAAATTCAACAACGACAAGGGCTGAACAAG
EST: gi|86602502|gb|CI264830.1|CI264830
EST:     GTCTTGGAATTCCTAATACTAAGAACTTCAATGAAATCACATCCATCCAG                         GAGGCAAAAGAACTCTGGGAGAAAATTCAACAACGACAAGGGCTGAACAAG
genomic: GTCTTGGAATTCCTAATACTAAGAACTTCAATGAAATCACATCCATCCAGgtaaatcatc ... ctgttttcagGAGGCAAAAGAACTCTGGGAGAAAATTCAACAACGACAAGGGCTGAACAAG
EST: gi|88261710|gb|CI365286.1|CI365286
EST:     TTCTTGGAATTCCTAATACTAAGAACTTCAATGAAATCACATCCATCCAG                         GAGGCAAAAGAACTCTGGGAGAAAATTCAACAACGACAAGGCCTGAACAAG
genomic: GTCTTGGAATTCCTAATACTAAGAACTTCAATGAAATCACATCCATCCAGgtaaatcatc ... ctgttttcagGAGGCAAAAGAACTCTGGGAGAAAATTCAACAACGACAAGGGCTGAACAAG
EST: gi|29675683|gb|CB671958.1|CB671958
EST:     GTCTTGGAATTCCTAATACTAAGAACTTCAATGAAATCACATCCATCCAG                         GAGGCAAAAGAACTCTGGGAGAAAATTCAACAACGACAAGGGCTGAACAAG
genomic: GTCTTGGAATTCCTAATACTAAGAACTTCAATGAAATCACATCCATCCAGgtaaatcatc ... ctgttttcagGAGGCAAAAGAACTCTGGGAGAAAATTCAACAACGACAAGGGCTGAACAAG
EST: gi|89183865|gb|CI046430.1|CI046430
EST:     GTCTTGGAATTCCTAATACTAAGAACTTCAATGAAATCACATCCATCCAG                         GAGGCAAAAGAACTCTGGGAGAAAATTCAACAACGACAAGGGCTGAACAAG
genomic: GTCTTGGAATTCCTAATACTAAGAACTTCAATGAAATCACATCCATCCAGgtaaatcatc ... ctgttttcagGAGGCAAAAGAACTCTGGGAGAAAATTCAACAACGACAAGGGCTGAACAAG
EST: gi|86484048|gb|CI126681.1|CI126681
EST:     TCCTAATACTAAGAACTTCAATGAAATCACATCCATCCAG                         GAGGCAAAAGAACTCTGGGAGAAAATTCAACAACGACAAGGGCTGAACAAG
genomic: TCCTAATACTAAGAACTTCAATGAAATCACATCCATCCAGgtaaatcatc ... ctgttttcagGAGGCAAAAGAACTCTGGGAGAAAATTCAACAACGACAAGGGCTGAACAAG
EST: gi|88376628|gb|CI537932.1|CI537932
EST:     GTCTTGGAATTCCTAATACTAAGAACTTCAATGAAATCACATCCATCCAG                         GAGGCAAAAGAACTCTGGGAGAAAATTCAACAACGACAAGGGCTGAACAAG
genomic: GTCTTGGAATTCCTAATACTAAGAACTTCAATGAAATCACATCCATCCAGgtaaatcatc ... ctgttttcagGAGGCAAAAGAACTCTGGGAGAAAATTCAACAACGACAAGGGCTGAACAAG
EST: gi|86841747|gb|CI337420.1|CI337420
EST:     GTCTTGGAATTCCTAATACTAAGAACTTCAATGAAATCACATCCATCCAG                         GAGGCAAAAGAACTCTGGGACAAAATTCAACAACTACAAGGGCTGAACAAG
genomic: GTCTTGGAATTCCTAATACTAAGAACTTCAATGAAATCACATCCATCCAGgtaaatcatc ... ctgttttcagGAGGCAAAAGAACTCTGGGAGAAAATTCAACAACGACAAGGGCTGAACAAG
EST: gi|29664555|gb|CB660830.1|CB660830
EST:     GTCTTGGAATTCCTAATACTAAGAACTTCAATGAAATCACATCCATCCAG                         GAGGCAAAAGAACTCTGGGAGAAAATTCAACAACGACAAGGGCTGAACAAG
genomic: GTCTTGGAATTCCTAATACTAAGAACTTCAATGAAATCACATCCATCCAGgtaaatcatc ... ctgttttcagGAGGCAAAAGAACTCTGGGAGAAAATTCAACAACGACAAGGGCTGAACAAG
EST: gi|89175351|gb|CI042372.1|CI042372
EST:     GTCTTGGAATTCCTAATACTAAGAACTTCAATGAAATCACATCCATCCAG                         GAGGCAAAAGAACTCTGGGAGAAAATTCAACAACGACAAGGGCTGAACAAG
genomic: GTCTTGGAATTCCTAATACTAAGAACTTCAATGAAATCACATCCATCCAGgtaaatcatc ... ctgttttcagGAGGCAAAAGAACTCTGGGAGAAAATTCAACAACGACAAGGGCTGAACAAG
EST: gi|88228807|gb|CI226658.1|CI226658
EST:     GTCTTGGAATTCCTAATACTAAGAACTTCAATGAAATCACATCCATCCAG                         GAGGCAAAAGAACTCTGGGAGAAAATTCAACAACGACAAGGGCTGAACAAG
genomic: GTCTTGGAATTCCTAATACTAAGAACTTCAATGAAATCACATCCATCCAGgtaaatcatc ... ctgttttcagGAGGCAAAAGAACTCTGGGAGAAAATTCAACAACGACAAGGGCTGAACAAG
EST: gi|58674178|gb|CK062864.1|CK062864
EST:     GTCTTGGAATTCCTAATACTAAGAACTTCAATGAAATCACATCCATCCAG                         GAGGCAAAAGAACTCTGGGAGAAAATTCAACAACGACAAGGGCTGAACAAG
genomic: GTCTTGGAATTCCTAATACTAAGAACTTCAATGAAATCACATCCATCCAGgtaaatcatc ... ctgttttcagGAGGCAAAAGAACTCTGGGAGAAAATTCAACAACGACAAGGGCTGAACAAG
EST: gi|88969280|gb|CI382829.1|CI382829
EST:     CTAAGAACTTCAATGAAATCACATCCATCCAG                         GAGGCAAAAGAACTCTGGGAGAAAATTCAACAACGACAAGGGCTGAACAAG
genomic: CTAAGAACTTCAATGAAATCACATCCATCCAGgtaaatcatc ... ctgttttcagGAGGCAAAAGAACTCTGGGAGAAAATTCAACAACGACAAGGGCTGAACAAG
EST: gi|88270850|gb|CI380150.1|CI380150
EST:     TCACATCCATCCAG                         GAGGCAAAAGAACTCTGGGAGAAAATTCAACAACGACAAGGGCTGAACAAG
genomic: TCACATCCATCCAGgtaaatcatc ... ctgttttcagGAGGCAAAAGAACTCTGGGAGAAAATTCAACAACGACAAGGGCTGAACAAG
EST: gi|88970350|gb|CI383852.1|CI383852
EST:     GTCTTGGAATTCCTAATACTAAGAACTTCAATGAAATCACATCCATCCAG                         GAGGCAAAAGAACTCTGGGAGAAAATTCAACAACGACAAGGGCTGAACAAG
genomic: GTCTTGGAATTCCTAATACTAAGAACTTCAATGAAATCACATCCATCCAGgtaaatcatc ... ctgttttcagGAGGCAAAAGAACTCTGGGAGAAAATTCAACAACGACAAGGGCTGAACAAG
EST: gi|29639904|gb|CB644913.1|CB644913
EST:     GTCTTGGAATTCCTAATACTAAGAACTTCAATGAAATCACATCCATCCAG                         GAGGCAAAAGAACTCTGGGAGAAAATTCAACAACGACAAGGGCTGAACAAG
genomic: GTCTTGGAATTCCTAATACTAAGAACTTCAATGAAATCACATCCATCCAGgtaaatcatc ... ctgttttcagGAGGCAAAAGAACTCTGGGAGAAAATTCAACAACGACAAGGGCTGAACAAG
EST: gi|12405365|gb|AU166966.1|AU166966
EST:     GTCTTGGAATTCCTAATACTAAGAACTTCAATGAAATCACATCCATCCAG                         GAGGCAAAAGAACTCTGGGAGAAAATTCAACAACGACAAGGGCTGAACAAG
genomic: GTCTTGGAATTCCTAATACTAAGAACTTCAATGAAATCACATCCATCCAGgtaaatcatc ... ctgttttcagGAGGCAAAAGAACTCTGGGAGAAAATTCAACAACGACAAGGGCTGAACAAG
EST: gi|29629058|gb|CB634069.1|CB634069
EST:     GTCTTGGAATTCCTAATACTAAGAACTTCAATGAAATCACATCCATCCAG                         GAGGCAAAAGAACTCTGGGAGAAAATTCAACAACGACAAGGGCTGAACAAG
genomic: GTCTTGGAATTCCTAATACTAAGAACTTCAATGAAATCACATCCATCCAGgtaaatcatc ... ctgttttcagGAGGCAAAAGAACTCTGGGAGAAAATTCAACAACGACAAGGGCTGAACAAG
EST: gi|88270933|gb|CI380233.1|CI380233
EST:     TCACATCCATCCAG                         GAGGCAAAAGAACTCTGGGAGAAAATTCAACAACGACAAGGGCTGAACAAG
genomic: TCACATCCATCCAGgtaaatcatc ... ctgttttcagGAGGCAAAAGAACTCTGGGAGAAAATTCAACAACGACAAGGGCTGAACAAG
EST: gi|86253465|gb|CI058390.1|CI058390
EST:     GTCTTGGAATTCCTAATACTAAGAACTTCAATGAAATCACATCCATCCAG                         GAGGCAAAAGAACTCTGGGAGAAAATTCAACAACGACAAGGGCTGAACAAG
genomic: GTCTTGGAATTCCTAATACTAAGAACTTCAATGAAATCACATCCATCCAGgtaaatcatc ... ctgttttcagGAGGCAAAAGAACTCTGGGAGAAAATTCAACAACGACAAGGGCTGAACAAG
EST: gi|88261891|gb|CI365467.1|CI365467
EST:     CTCTTTGAATTCCTAATAGTAAGAACTTCAATGAAATCACATCCATCCAG                         GAGGCAAAAGAACTCTGGGAGGAAATTCAACAACGACAAGGGCTGAACAAG
genomic: GTCTTGGAATTCCTAATACTAAGAACTTCAATGAAATCACATCCATCCAGgtaaatcatc ... ctgttttcagGAGGCAAAAGAACTCTGGGAGAAAATTCAACAACGACAAGGGCTGAACAAG
EST: gi|86436403|gb|CI118125.1|CI118125
EST:     GTCTTGGAATTCCTAATACTAAGAACTTCAATGAAATCACATCCATCCAG                         GAGGCAAAAGAACTCTGGGAGAAAATTCAACAACGACAAGGGCTGAACAAG
genomic: GTCTTGGAATTCCTAATACTAAGAACTTCAATGAAATCACATCCATCCAGgtaaatcatc ... ctgttttcagGAGGCAAAAGAACTCTGGGAGAAAATTCAACAACGACAAGGGCTGAACAAG
EST: gi|86868760|gb|CI333137.1|CI333137
EST:     GTCTTGGAATTCCTAATACTAAGAACTTCAATGAAATCACATCCATCCAG                         GAGGCAAAAGAACTCTGGGAGAAAATTCAACAACGACAAGGGCTGAACAAG
genomic: GTCTTGGAATTCCTAATACTAAGAACTTCAATGAAATCACATCCATCCAGgtaaatcatc ... ctgttttcagGAGGCAAAAGAACTCTGGGAGAAAATTCAACAACGACAAGGGCTGAACAAG
EST: gi|88288183|gb|CI515327.1|CI515327
EST:     CTAAGAACTTCAATGAAATCACATCCATGCAG                         GAGGCAAAAGAACTCTGGGAGGAAATTCAACAACGACAAGGGCTGAACAAN
genomic: CTAAGAACTTCAATGAAATCACATCCATCCAGgtaaatcatc ... ctgttttcagGAGGCAAAAGAACTCTGGGAGAAAATTCAACAACGACAAGGGCTGAACAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgtggtaaattggtaatggaaggggcaattgacacctcttatttctgttttcagGAGGCAAAAGAACTCTGGGAGAAAATTCAACAACGACAAGGGCTGAACAAGTGGCGGCCAGACCTAGAAGAAGAGTACGAAGATCAGGAGGGAAATATCT
                           aattgac  putative branch site (score: 3)
                                   cctcttatttctgttt  CT-rich tract
                                     tcttattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaaatcatcactttatgctacctgtacatccactgaatagcttaatttgttctctcagaaatttgagagaaatgagtactttgcttaatcttcccatattggctgtttttatacatgttctcagaaattactgttgctgcgaatgtggtaaattggtaatggaaggggcaattgacacctcttatttctgttttcagGAGGCAAAAGAACTCTGGGAGAAAATTCAACAACGACAAGGGCTGAACAAGTGGCGGCCAGACCTAGAAGAAGAGTACGAAGATCAGGAGGGAAATATCT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA