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gtatgctgagtctagagccaacacaatttcgcgagttctacatttaaatgtgtatatgtgtctaactcccatttatcatattgcagCACCCCTGTCTACAGTCCACCTGCTTTCACATCTGAAGAAGTCTACGAAAAAGTTCTGGACCTACAAGATAAG
species | Oryza sativa |
transcript | LOC_Os02g48110.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GCAGAGAAAGTAAAAACTTGGTTGGAGGAGAAGGAAGCCATACAGAAAAG CACCCCTGTCTACAGTCCACCTGCTTTCACATCTGAAGAAGTCTACGAAAAEST: gi|27576359|gb|CA999053.1|CA999053
genomic: GCAGAGAAAGTAAAAACTTGGTTGGAGGAGAAGGAAGCCATACAGAAAAGgtatgctgag ... catattgcagCACCCCTGTCTACAGTCCACCTGCTTTCACATCTGAAGAAGTCTACGAAAA
EST: GCAGAGAAAGTAAAAACTTGGTTGGAGGAGAAGGAAGCCATACAGAAAAG CACCCCTGTCTACAGTCCACCTGCTTTCACATCTGAAGAAGTCTACGAAAAEST: gi|29673173|gb|CB669448.1|CB669448
genomic: GCAGAGAAAGTAAAAACTTGGTTGGAGGAGAAGGAAGCCATACAGAAAAGgtatgctgag ... catattgcagCACCCCTGTCTACAGTCCACCTGCTTTCACATCTGAAGAAGTCTACGAAAA
EST: GCAGAGAAAGTAAAAACTTGGTTGGAGGAGAAGGAAGCCATACAGAAAAG CACCCCTGTCTACAGTCCACCTGCTTTCACATCTGAAGAAGTCTACGAAAAEST: gi|66914322|gb|CX101170.1|CX101170
genomic: GCAGAGAAAGTAAAAACTTGGTTGGAGGAGAAGGAAGCCATACAGAAAAGgtatgctgag ... catattgcagCACCCCTGTCTACAGTCCACCTGCTTTCACATCTGAAGAAGTCTACGAAAA
EST: GCAGAGAAAGTAAAAACTTGGTTGGAGGAGAAGGAAGCCATACAGAAAAG CACCCCTGTCTACAGTCCACCTGCTTTCACATCTGAAGAAGTCTACGAAAAEST: gi|29673174|gb|CB669449.1|CB669449
genomic: GCAGAGAAAGTAAAAACTTGGTTGGAGGAGAAGGAAGCCATACAGAAAAGgtatgctgag ... catattgcagCACCCCTGTCTACAGTCCACCTGCTTTCACATCTGAAGAAGTCTACGAAAA
EST: GCAGAGAAAGTAAAAACTTGGTTGGAGGAGAAGGAAGCCATACAGAAAAG CACCCCTGTCTACAGTCCACCTGCTTTCACATCTGAAGAAGTCTACGAAAAEST: gi|33793770|gb|CF322769.1|CF322769
genomic: GCAGAGAAAGTAAAAACTTGGTTGGAGGAGAAGGAAGCCATACAGAAAAGgtatgctgag ... catattgcagCACCCCTGTCTACAGTCCACCTGCTTTCACATCTGAAGAAGTCTACGAAAA
EST: CAGAGAAAGTAAAAACTTGGTTGGAGGGAGAAGGAAGCCATACAGAAAAG CACCCCTGTCTACAGTCCACCTGCTTTCACATCTGAAGAAGTCTACGAAAAEST: gi|27576406|gb|CA999100.1|CA999100
genomic: CAGAGAAAGTAAAAACTTGGTTGGAGG-AGAAGGAAGCCATACAGAAAAGgtatgctgag ... catattgcagCACCCCTGTCTACAGTCCACCTGCTTTCACATCTGAAGAAGTCTACGAAAA
EST: GCAGAGAAAGTAAAAACTTGGTTGGAGGAGAAGGAAGCCATACAGAAAAG CACCCCTGTCTACAGTCCACCTGCTTTCACATCTGAAGAAGTCTACGAAAAEST: gi|58663600|gb|CK052286.1|CK052286
genomic: GCAGAGAAAGTAAAAACTTGGTTGGAGGAGAAGGAAGCCATACAGAAAAGgtatgctgag ... catattgcagCACCCCTGTCTACAGTCCACCTGCTTTCACATCTGAAGAAGTCTACGAAAA
EST: GCCATACAGAAAAG CACCTCTGTCTACAGTCCACCTGCTTTCACATCTGAAGAAGTCTACGAAAAEST: gi|33800174|gb|CF325951.1|CF325951
genomic: GCCATACAGAAAAGgtatgctgag ... catattgcagCACCCCTGTCTACAGTCCACCTGCTTTCACATCTGAAGAAGTCTACGAAAA
EST: GAGAAGGAAGCCATACAGAAAAG CACCCCTGTCTACAGTCCACCTGCTTTCACATCTGAAGAAGTCTACGAAAA
genomic: GAGAAGGAAGCCATACAGAAAAGgtatgctgag ... catattgcagCACCCCTGTCTACAGTCCACCTGCTTTCACATCTGAAGAAGTCTACGAAAA
cgagttctacatttaaatgtgtatatgtgtctaactcccatttatcatattgcagCACCCCTGTCTACAGTCCACCTGCTTTCACATCTGAAGAAGTCTACGAAAAAGTTCTGGACCTACAAGATAAG
gtctaac putative branch site (score: 39)
atttaaatgtgtatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgctgagtctagagccaacacaatttcgcgagttctacatttaaatgtgtatatgtgtctaactcccatttatcatattgcagCACCCCTGTCTACAGTCCACCTGCTTTCACATCTGAAGAAGTCTACGAAAAAGTTCTGGACCTACAAGATAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT