1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtatgttcttcttcctgtcctttcaaatccagtagtaggaatgtccatgatccattgcatattaaccctgtatatttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGTCAGCAGATTTCACCCACAAGACAAACACAAGATTTGATTTCCACAAGGA
species | Oryza sativa |
transcript | LOC_Os01g25820.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCG GTGTGTTCTACTTTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGTEST: gi|88839228|gb|CI000700.1|CI000700
genomic: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
EST: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCG GTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGTEST: gi|22304881|gb|BQ906103.1|BQ906103
genomic: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
EST: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCG GTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGTEST: gi|87026874|gb|CI259527.1|CI259527
genomic: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
EST: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCG GTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGTEST: gi|18386603|gb|BM419801.1|BM419801
genomic: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
EST: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCG GTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCACGTTGEST: gi|88278864|gb|CI397668.1|CI397668
genomic: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCA-GTTG
EST: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCG GTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGTEST: gi|86903444|gb|CI322927.1|CI322927
genomic: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
EST: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCG GTGTGTTCTACTGTGGTGAGCCTGTTCTGGTTCCCCAACTAAGGCAGTTGTEST: gi|29631716|gb|CB636725.1|CB636725
genomic: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
EST: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCG GTGTGTTCTAATGTGGTGAGCCTGTGCTGAAACACCCAACTAAGGCAGTTGEST: gi|22304870|gb|BQ906092.1|BQ906092
genomic: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTC-CCCAACTAAGGCAGTTG
EST: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCG GTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGTEST: gi|88970125|gb|CI383627.1|CI383627
genomic: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
EST: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCG GTGTGTTCTACTGTGGTGACCCTTTTCTGGTTCCCCAACTAAGGCAGTTGTEST: gi|86838358|gb|CI327731.1|CI327731
genomic: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
EST: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCG GTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGTEST: gi|29686947|gb|CB683222.1|CB683222
genomic: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
EST: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCG GTGTGTTCTACTGTGGTEST: gi|58677656|gb|CK066343.1|CK066343
genomic: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGT
EST: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAACCATGAGAACCAGCGCGTCG GTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGTEST: gi|86502786|gb|CI145419.1|CI145419
genomic: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
EST: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCG GTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGTEST: gi|86882132|gb|CI325666.1|CI325666
genomic: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
EST: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCG GTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGTEST: gi|86844292|gb|CI337648.1|CI337648
genomic: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
EST: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCG GTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGTEST: gi|29631697|gb|CB636706.1|CB636706
genomic: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
EST: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCG GTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGTEST: gi|7332717|gb|AU086063.1|AU086063
genomic: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
EST: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCG GTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGTEST: gi|86889041|gb|CI314657.1|CI314657
genomic: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
EST: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCG GTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGTEST: gi|88457621|gb|CI537019.1|CI537019
genomic: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
EST: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCG GTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGTEST: gi|88275948|gb|CI396552.1|CI396552
genomic: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
EST: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCG GTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGTEST: gi|163926970|gb|EG710212.1|EG710212
genomic: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
EST: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCG GTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGTEST: gi|58660191|gb|CK048871.1|CK048871
genomic: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
EST: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAACCATGAGAACCAGCGCGTCG GTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGTEST: gi|86852169|gb|CI319104.1|CI319104
genomic: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
EST: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCG GTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGTEST: gi|700000|gb|D46291.1|D46291
genomic: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
EST: GCGAAG-GTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCG GTGTGTTCTACTGTGGTGAGCCTGTNCTGGTTCCCCAACTAAGGCAGTTGTEST: gi|86903049|gb|CI324519.1|CI324519
genomic: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
EST: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCG GTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGTEST: gi|86434534|gb|CI105767.1|CI105767
genomic: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
EST: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCG GTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGTEST: gi|29663215|gb|CB659490.1|CB659490
genomic: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
EST: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCG GTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGTEST: gi|29631693|gb|CB636702.1|CB636702
genomic: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
EST: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCG GTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGTEST: gi|86869218|gb|CI338942.1|CI338942
genomic: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
EST: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCG GTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGTEST: gi|15856444|gb|BI809256.1|BI809256
genomic: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
EST: GCGAAGCGTCTTCAAGAAGGTT-CGGTCAGCCATGAGAACCAGCGCGTCG GTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGTEST: gi|22305179|gb|BQ906401.1|BQ906401
genomic: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
EST: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCG GTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGTEST: gi|58693753|gb|CK082440.1|CK082440
genomic: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
EST: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAACCATGAGAACCAGCGCGTCG GTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGCTTGEST: gi|88323419|gb|CI553664.1|CI553664
genomic: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAG-TTG
EST: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCG GTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGTEST: gi|86870035|gb|CI317956.1|CI317956
genomic: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
EST: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCG GTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGTEST: gi|29633928|gb|CB638937.1|CB638937
genomic: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
EST: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCG GTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGTEST: gi|58030758|gb|CX728301.1|CX728301
genomic: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
EST: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCG GTGTGTTTTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGTEST: gi|186893180|gb|FG124865.1|FG124865
genomic: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
EST: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAACCATGAGAACCAGCGCGTCG GTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGTEST: gi|86859922|gb|CI321911.1|CI321911
genomic: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
EST: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCG GTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGTEST: gi|29687358|gb|CB683633.1|CB683633
genomic: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
EST: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCG GTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGTEST: gi|88969675|gb|CI383178.1|CI383178
genomic: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
EST: GCGAAGCGTCTTCAAGAAGGTTGCGGTCACCCATGAGAACCAGCGCGTCG GTGTGTTCTACTGTGGTGAGCCTGTGCTGTTTCCCCAACTAAGGCAGTTGTEST: gi|88846112|gb|CI372880.1|CI372880
genomic: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
EST: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCG GTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGTEST: gi|8527272|gb|AU092087.1|AU092087
genomic: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
EST: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCG GTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGTEST: gi|86864463|gb|CI334163.1|CI334163
genomic: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
EST: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCG GTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
genomic: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
ccagtagtaggaatgtccatgatccattgcatattaaccctgtatatttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGTCAGCAGATTTCACCCACAAGACAAACACAAGATTTGATTTCCACAAGGA
tattaac putative branch site (score: 42)
tatttcttc putative PPT
tatatttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgttcttcttcctgtcctttcaaatccagtagtaggaatgtccatgatccattgcatattaaccctgtatatttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGTCAGCAGATTTCACCCACAAGACAAACACAAGATTTGATTTCCACAAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT