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gtcagttcctggaccagtttatatctgtatgctttgatattataattttgtagcttcagtaaacatcttttaaggattacacagctagtgtcatgaaacatttaatgatggcccacacttgctttcgtatttcagCGGATTCATTGTCAGTGGAGTCGTTGTTGGAACTTTTGGATGAGGAAAGTTTAAGAAAAGACACGGCCCTTCCTTCTCCTGAATGGTCTTCGGATCATAT
species | Oryza sativa |
transcript | LOC_Os10g27230.3 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: AAACTGCACACGAGATTTCACTGGAACGGTTGATTACATATTTTACACAG CGGATTCATTGTCAGTGGAGTCGTTGTTGGAACTTTTGGATGAGGAAAGTTEST: gi|89188118|gb|CI115367.1|CI115367
genomic: AAACTGCACACGAGATTTCACTGGAACGGTTGATTACATATTTTACACAGgtcagttcct ... cgtatttcagCGGATTCATTGTCAGTGGAGTCGTTGTTGGAACTTTTGGATGAGGAAAGTT
EST: GCACACGAGATTTCACTGGAACGGTTGATTACATATGTTACACAG CGGATTCATTGTCAGTGGAGTCGTTGTTGGAACTTTTGGATGAGGAAAGTTEST: gi|29613589|gb|CB618602.1|CB618602
genomic: GCACACGAGATTTCACTGGAACGGTTGATTACATATTTTACACAGgtcagttcct ... cgtatttcagCGGATTCATTGTCAGTGGAGTCGTTGTTGGAACTTTTGGATGAGGAAAGTT
EST: AAACTGCACACGAGATTTCACTGGAACGGTTGATTACATATTTTACACAG CGGATTCATTGTCAGTGGAGTCGTTGTTGGAACTTTTGGATGAGGAAAGTTEST: gi|29623249|gb|CB628260.1|CB628260
genomic: AAACTGCACACGAGATTTCACTGGAACGGTTGATTACATATTTTACACAGgtcagttcct ... cgtatttcagCGGATTCATTGTCAGTGGAGTCGTTGTTGGAACTTTTGGATGAGGAAAGTT
EST: AAACTGCACACGAGATTTCACTGGAACGGTTGATTACATATTTTACACAG CGGATTCATTGTCAGTGGAGTCGTTGTTGGAACTTTTGGATGAGGAAAGTT
genomic: AAACTGCACACGAGATTTCACTGGAACGGTTGATTACATATTTTACACAGgtcagttcct ... cgtatttcagCGGATTCATTGTCAGTGGAGTCGTTGTTGGAACTTTTGGATGAGGAAAGTT
acagctagtgtcatgaaacatttaatgatggcccacacttgctttcgtatttcagCGGATTCATTGTCAGTGGAGTCGTTGTTGGAACTTTTGGATGAGGAAAGTTTAAGAAAAGACACGGCCCTTCCTTCTCCTGAATGGTCTTCGGATCATAT
atttaat putative branch site (score: 4)
cttgctttc putative PPT
atgaaacatttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagttcctggaccagtttatatctgtatgctttgatattataattttgtagcttcagtaaacatcttttaaggattacacagctagtgtcatgaaacatttaatgatggcccacacttgctttcgtatttcagCGGATTCATTGTCAGTGGAGTCGTTGTTGGAACTTTTGGATGAGGAAAGTTTAAGAAAAGACACGGCCCTTCCTTCTCCTGAATGGTCTTCGGATCATAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA