1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...ccttcctcctttgcaagctgagttacagtttgaagtgaaacagtgcttatgatctccttgtttttgttacttgtttgctgatatgtgttcctatttgcagCTTCCATCTAGCTGTATTGAGCGCGCTTCAGTCATGGCAGCCAAACTTCAACAGGAGTTAAGTGAGCGTGAGAAAAATAAGTTTTGTAGGCTAATGGACG
species | Oryza sativa |
transcript | LOC_Os04g58630.2 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TGCGCTGCTTGCACAG CTTCCATCTAGCTGTATTGAGCGCGCTTCAGTCATGGCAGCCAAACTTCAAEST: gi|58680507|gb|CK069194.1|CK069194
genomic: TGCGCTGCTTGCACAGgttagtttta ... ctatttgcagCTTCCATCTAGCTGTATTGAGCGCGCTTCAGTCATGGCAGCCAAACTTCAA
EST: CTGGAGCTTCAGACAGAAGCTTCGGTCTTAATGTTGCGCTGCTTGCACAG CTTCCATCTAGCTGTATTGAGCGCGCTTCAGTCATGGCAGCCAAACTTCAAEST: gi|29670082|gb|CB666357.1|CB666357
genomic: CTGGAGCTTCAGACAGAAGCTTCGGTCTTAATGTTGCGCTGCTTGCACAGgttagtttta ... ctatttgcagCTTCCATCTAGCTGTATTGAGCGCGCTTCAGTCATGGCAGCCAAACTTCAA
EST: CTGGAGCTTCAGACAGAAGCTTCGGTCTTAATGTTGCGCTGCTTGCACAG CTTCCATCTAGCTGTATTGAGCGCGCTTCAGTCATGGCAGCCAAACTTCAAEST: gi|58685907|gb|CK074594.1|CK074594
genomic: CTGGAGCTTCAGACAGAAGCTTCGGTCTTAATGTTGCGCTGCTTGCACAGgttagtttta ... ctatttgcagCTTCCATCTAGCTGTATTGAGCGCGCTTCAGTCATGGCAGCCAAACTTCAA
EST: CTGGAGCTTCAGACAGAAGCTTCGGTCTTAATGTTGCGCTGCTTGCACAG CTTCCATCTAGCTGTATTGAGCGCGCTTCAGTCATGGCAGCCAAACTTCAAEST: gi|58685764|gb|CK074451.1|CK074451
genomic: CTGGAGCTTCAGACAGAAGCTTCGGTCTTAATGTTGCGCTGCTTGCACAGgttagtttta ... ctatttgcagCTTCCATCTAGCTGTATTGAGCGCGCTTCAGTCATGGCAGCCAAACTTCAA
EST: CTGGAGCTTCAGACAGAAGCTTCGGTCTTAATGTTGCGCTGCTTGCACAG CTTCCATCTAGCTGTATTGAGCGCGCTTCAGTCATGGCAGCCAAACTTCAAEST: gi|58653372|gb|CK042052.1|CK042052
genomic: CTGGAGCTTCAGACAGAAGCTTCGGTCTTAATGTTGCGCTGCTTGCACAGgttagtttta ... ctatttgcagCTTCCATCTAGCTGTATTGAGCGCGCTTCAGTCATGGCAGCCAAACTTCAA
EST: CTGGAGCTTCAGACAGAAGCTTCGGTCTTAATGTTGCGCTGCTTGCACAG CTTCCATCTAGCTGTATTGAGCGCGCEST: gi|29672951|gb|CB669226.1|CB669226
genomic: CTGGAGCTTCAGACAGAAGCTTCGGTCTTAATGTTGCGCTGCTTGCACAGgttagtttta ... ctatttgcagCTTCCATCTAGCTGTATTGAGCGCGC
EST: CTGGAGCTTCAGACAGAAGCTTCGGTCTTAATGTTGCGCTGCTTGCACAG CTTCCATCTAGCTGTATTGAGCGCGCTTCAGTCATGGCAGCCAAACTTCAAEST: gi|58666967|gb|CK055653.1|CK055653
genomic: CTGGAGCTTCAGACAGAAGCTTCGGTCTTAATGTTGCGCTGCTTGCACAGgttagtttta ... ctatttgcagCTTCCATCTAGCTGTATTGAGCGCGCTTCAGTCATGGCAGCCAAACTTCAA
EST: CTGGAGCTTCAGACAGAAGCTTCGGTCTTAATGTTGCGCTGCTTGCACAG CTTCCATCTAGCTGTATTGAGCGCGCTTCAGTCATGGCAGCCAAACTTCAA
genomic: CTGGAGCTTCAGACAGAAGCTTCGGTCTTAATGTTGCGCTGCTTGCACAGgttagtttta ... ctatttgcagCTTCCATCTAGCTGTATTGAGCGCGCTTCAGTCATGGCAGCCAAACTTCAA
cttatgatctccttgtttttgttacttgtttgctgatatgtgttcctatttgcagCTTCCATCTAGCTGTATTGAGCGCGCTTCAGTCATGGCAGCCAAACTTCAACAGGAGTTAAGTGAGCGTGAGAAAAATAAGTTTTGTAGGCTAATGGACG
tgctgat putative branch site (score: 3)
ttcctattt putative PPT
tttttgtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccttcctcctttgcaagctgagttacagtttgaagtgaaacagtgcttatgatctccttgtttttgttacttgtttgctgatatgtgttcctatttgcagCTTCCATCTAGCTGTATTGAGCGCGCTTCAGTCATGGCAGCCAAACTTCAACAGGAGTTAAGTGAGCGTGAGAAAAATAAGTTTTGTAGGCTAATGGACG
ccttcct
- - - - - -tgcaagc
- - - - - - - - - - - - - - - - - - gaaacag
- - - - - - - - - - - - - - - - - - - - - - gcttatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgat