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...ggattcattccttgtcaagtatcttgttagtaaagcacatcataaatttttgaatagaaaggcataactatgttaattattttctgcaacttctctccagTGGTGAGAGTATGGAGAATGCATTGCGGGCATGCTGCAAAGGTATAAAAATTGGGAAGATTCTTATTCACAGGGAAGGAGACAATGGCAAACAG
species | Oryza sativa |
transcript | LOC_Os02g17320.2 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: ACTGGGGTAGAGTTCTCCAAAAGATTGTGTGGTATCTCAGTGATTAGAAG TGGTGAGAGTATGGAGAATGCATTGCGGGCATGCTGEST: gi|3760815|gb|C98069.1|C98069
genomic: ACTGGGGTAGAGTTCTCCAAAAGATTGTGTGGTATCTCAGTGATTAGAAGgtagtaactt ... ttctctccagTGGTGAGAGTATGGAGAATGCATTGCGGGCATGCTG
EST: CTGGGGTAGAGTTCTCCAAAAGATTGTGTGGTATCTCAGTGATTAGAAAG TGGTGAGAGTATGGAGAATGCATTGCGGGCATGCTGCAAAGGTATAAAAAEST: gi|87029276|gb|CI276544.1|CI276544
genomic: CTGGGGTAGAGTTCTCCAAAAGATTGTGTGGTATCTCAGTGATTAG-AAGgtagtaactt ... ttctctccagTGGTGAGAGTATGGAGAATGCATTGCGGGCATGCTGCAAAGGTATAAAAA
EST: TCTCAGTGATTAGAAG TGGTGAGAGTATGGAGAATGCATTGCGGGCATGCTGCAAAGGTATAAAAATEST: gi|12623049|gb|AU173262.1|AU173262
genomic: TCTCAGTGATTAGAAGgtagtaactt ... ttctctccagTGGTGAGAGTATGGAGAATGCATTGCGGGCATGCTGCAAAGGTATAAAAAT
EST: ACTGGGGTAGAGTTCTCCAAAAGATTGGGTGGTATCTCAGTGATTAGAAG TGGGGAGAGTTTGGANAATGCATTGNGGGCATGCTGEST: gi|29675373|gb|CB671648.1|CB671648
genomic: ACTGGGGTAGAGTTCTCCAAAAGATTGTGTGGTATCTCAGTGATTAGAAGgtagtaactt ... ttctctccagTGGTGAGAGTATGGAGAATGCATTGCGGGCATGCTG
EST: ACTGGGGTAGAGTTCTCCAAAAGATTGTGTGGTATCTCAGTGATTAGAAG TGGTGAGAGTATGGAGAATGCATTGCGGGCATGCTGCAAAGGTATAAAAATEST: gi|29627016|gb|CB632027.1|CB632027
genomic: ACTGGGGTAGAGTTCTCCAAAAGATTGTGTGGTATCTCAGTGATTAGAAGgtagtaactt ... ttctctccagTGGTGAGAGTATGGAGAATGCATTGCGGGCATGCTGCAAAGGTATAAAAAT
EST: ACTGGGGTAGAGTTCTCCAAAAGATTGTGTGGTATCTCAGTGATTAGAAG TGGTGAGAGTATGGAGAATGCATTGCGGGCATGCTGCAAAGGTATAAAAATEST: gi|66922909|gb|CX109757.1|CX109757
genomic: ACTGGGGTAGAGTTCTCCAAAAGATTGTGTGGTATCTCAGTGATTAGAAGgtagtaactt ... ttctctccagTGGTGAGAGTATGGAGAATGCATTGCGGGCATGCTGCAAAGGTATAAAAAT
EST: ACTGGGGTAGAGTTCTCCAAAAGATTGTGTGGTATCTCAGTGATTAGAAG TGGTGAGAGTATGGAGAACGCATTGCGGGCATGCTGCAAAGGTATAAAAAT
genomic: ACTGGGGTAGAGTTCTCCAAAAGATTGTGTGGTATCTCAGTGATTAGAAGgtagtaactt ... ttctctccagTGGTGAGAGTATGGAGAATGCATTGCGGGCATGCTGCAAAGGTATAAAAAT
atttttgaatagaaaggcataactatgttaattattttctgcaacttctctccagTGGTGAGAGTATGGAGAATGCATTGCGGGCATGCTGCAAAGGTATAAAAATTGGGAAGATTCTTATTCACAGGGAAGGAGACAATGGCAAACAG
tgttaat putative branch site (score: 3)
cttctctcc putative PPT
ataactatgttaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggattcattccttgtcaagtatcttgttagtaaagcacatcataaatttttgaatagaaaggcataactatgttaattattttctgcaacttctctccagTGGTGAGAGTATGGAGAATGCATTGCGGGCATGCTGCAAAGGTATAAAAATTGGGAAGATTCTTATTCACAGGGAAGGAGACAATGGCAAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA