1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaatcatttcattgacaagtttcctgttaaactaggctaatgaagttccatctgattcctgatattatgctagtgttgctgatgagctctcgtctgttttgtacagGGAGAAAAGGGAGGTCCGTGTGCAGATAAAAATCAAGAACATGCGAAGGGGATTCATCGGCTCCGATCACCCTGCATCTCCCAGAATTTGCTGAATTAAT
species | Oryza sativa |
transcript | LOC_Os01g57890.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TATCTACGGGGTTAGCCCGTTCCACCCCTAGATTCAGAAAAACACCAGAG GGAGAAAAGGGAGGTCCGTGTGCAGATAAAAATCAAGAACATGCGAAGGGGEST: gi|88464638|gb|CI534775.1|CI534775
genomic: TATCTACGGGGTTAGCCCGTTCCACCCCTAGATTCAGAAAAACACCAGAGgtaatcattt ... ttttgtacagGGAGAAAAGGGAGGTCCGTGTGCAGATAAAAATCAAGAACATGCGAAGGGG
EST: TATCTACGGGGTTAGCCCGTTCCACCCCTAGATTCAGAAAAACACCAGAG GGAGAAAAGGGAGGTCCGTGTGCAGATAAAAATCAAGAACATGCGAAGGGGEST: gi|88295270|gb|CI525423.1|CI525423
genomic: TATCTACGGGGTTAGCCCGTTCCACCCCTAGATTCAGAAAAACACCAGAGgtaatcattt ... ttttgtacagGGAGAAAAGGGAGGTCCGTGTGCAGATAAAAATCAAGAACATGCGAAGGGG
EST: TATCTACGGGGTTAGCCCGTTCCACCCCTAGATTCAGAAAAACACCAGAG GGAGAAAAGGGAGGTCCGTGTGCAGATAAAAATCAAGAACATGCGAAGGGGEST: gi|3762562|gb|AU029314.1|AU029314
genomic: TATCTACGGGGTTAGCCCGTTCCACCCCTAGATTCAGAAAAACACCAGAGgtaatcattt ... ttttgtacagGGAGAAAAGGGAGGTCCGTGTGCAGATAAAAATCAAGAACATGCGAAGGGG
EST: TATCTACGGGGTTAGCCCGTTCCACCCCTAGATTCAGAAAAACACCAGAG GGAGAAAAGGGAGGTCCGTGTGCAGATAAAAATCAAGAACATGCGAAGGGGEST: gi|88257569|gb|CI360155.1|CI360155
genomic: TATCTACGGGGTTAGCCCGTTCCACCCCTAGATTCAGAAAAACACCAGAGgtaatcattt ... ttttgtacagGGAGAAAAGGGAGGTCCGTGTGCAGATAAAAATCAAGAACATGCGAAGGGG
EST: TATGTACGGGGTTAGCCCGTTCCACCCCTAGATTCAGAAAAACACCAGAG GGAGAAAAGGGAGGTCCGTGTGCAGATAAAAATCAAGAACATGCGAAGGGGEST: gi|86601822|gb|CI258498.1|CI258498
genomic: TATCTACGGGGTTAGCCCGTTCCACCCCTAGATTCAGAAAAACACCAGAGgtaatcattt ... ttttgtacagGGAGAAAAGGGAGGTCCGTGTGCAGATAAAAATCAAGAACATGCGAAGGGG
EST: TATCTACGGGGTTAGCCCGTTCCACCCCTAGATTCAGAAAAACACCAGAG GGAGAAAAGGGAGGTCCGTGTGCAGATAAAAATCAAGAACATGCGAAGGGGEST: gi|88464137|gb|CI529526.1|CI529526
genomic: TATCTACGGGGTTAGCCCGTTCCACCCCTAGATTCAGAAAAACACCAGAGgtaatcattt ... ttttgtacagGGAGAAAAGGGAGGTCCGTGTGCAGATAAAAATCAAGAACATGCGAAGGGG
EST: ACGGGGTT-GCCCGGTTCCACCCCTAGATTCANG-AAAACACCAGAG GGAGAAAAGGGAGGTCCGTGTGGCAGAGAAAAATCAAGAACATGCGAAGGGEST: gi|88413679|gb|CI526241.1|CI526241
genomic: ACGGGGTTAGCCC-GTTCCACCCCTAGATTCA-GAAAAACACCAGAGgtaatcattt ... ttttgtacagGGAGAAAAGGGAGGTCCGTGT-GCAGATAAAAATCAAGAACATGCGAAGGG
EST: TATTTACGGGGTTAGCCCGTTCCACCCCTAGATTCAGAAAAACACCAGAG GGAGAAAAGGGAGGTCCGTGTGCAGATAAAAATCAAGAACATGCGAAGGGGEST: gi|88256296|gb|CI358684.1|CI358684
genomic: TATCTACGGGGTTAGCCCGTTCCACCCCTAGATTCAGAAAAACACCAGAGgtaatcattt ... ttttgtacagGGAGAAAAGGGAGGTCCGTGTGCAGATAAAAATCAAGAACATGCGAAGGGG
EST: TATCTACGGGGTTAGCCCGTTCCACCCCTAGATTCAGAAAAACACCAGAG GGAGAAAAGGGAGGTCCGTGTGCAGATAAAAATCAAGAACATGCGAAGGGGEST: gi|89197716|gb|CI012497.1|CI012497
genomic: TATCTACGGGGTTAGCCCGTTCCACCCCTAGATTCAGAAAAACACCAGAGgtaatcattt ... ttttgtacagGGAGAAAAGGGAGGTCCGTGTGCAGATAAAAATCAAGAACATGCGAAGGGG
EST: TATCTACGGGGTTAGCCCGTTCCACCCCTAGATTCAGAAAAACACCAGAG GGAGAAAAGGGAGGTCCGTGTGCAGATAAAAATCAAGAACATGCGAAGGGGEST: gi|88467463|gb|CI537105.1|CI537105
genomic: TATCTACGGGGTTAGCCCGTTCCACCCCTAGATTCAGAAAAACACCAGAGgtaatcattt ... ttttgtacagGGAGAAAAGGGAGGTCCGTGTGCAGATAAAAATCAAGAACATGCGAAGGGG
EST: TATTTACGGGGTTAGCCCGTTCCACCCCTAGATTCAGAAAAACACCAGAG GGAGAAAAGGGAGGTCCGTGTGCAGATAAAAATCAAGAACATGCGAAGGGGEST: gi|88466502|gb|CI532309.1|CI532309
genomic: TATCTACGGGGTTAGCCCGTTCCACCCCTAGATTCAGAAAAACACCAGAGgtaatcattt ... ttttgtacagGGAGAAAAGGGAGGTCCGTGTGCAGATAAAAATCAAGAACATGCGAAGGGG
EST: TATCTACGGGGTTAGCCCGTTCCACCCCTAGATTCAGAAAAACACCAGAG GGAGAAAAGGGAGGTCCGTGTGCAGATAAAAATCAAGAACATGCGAAGGGGEST: gi|88976303|gb|CI024520.1|CI024520
genomic: TATCTACGGGGTTAGCCCGTTCCACCCCTAGATTCAGAAAAACACCAGAGgtaatcattt ... ttttgtacagGGAGAAAAGGGAGGTCCGTGTGCAGATAAAAATCAAGAACATGCGAAGGGG
EST: TATCTACGGGGTTAGCCCGTTCCACCCCTAGATTCAGAAAAACACCAGAG GGAGAAAAGGGAGGTCCGTGTGCAGATAAAAATCAAGAACATGCGAAGGGGEST: gi|86526010|gb|CI166216.1|CI166216
genomic: TATCTACGGGGTTAGCCCGTTCCACCCCTAGATTCAGAAAAACACCAGAGgtaatcattt ... ttttgtacagGGAGAAAAGGGAGGTCCGTGTGCAGATAAAAATCAAGAACATGCGAAGGGG
EST: TATCTACGGGGTTAGCCCGTTCCACCCCTAGATTCAGAAAAACACCAGAG GGAGAAAAGGGAGGTCCGTGTGCAGATAAAAATCAAGAACATGCGAAGGGGEST: gi|88449418|gb|CI533977.1|CI533977
genomic: TATCTACGGGGTTAGCCCGTTCCACCCCTAGATTCAGAAAAACACCAGAGgtaatcattt ... ttttgtacagGGAGAAAAGGGAGGTCCGTGTGCAGATAAAAATCAAGAACATGCGAAGGGG
EST: TATCTACGGGGTTAGCCCGTTCCACCCCTAGATTCAGAAAAACACCAGAG GGAGAAAAGGGAGGTCCGTGTGCAGATAAAAATCAAGAACATGCGAAGGGGEST: gi|88320608|gb|CI525550.1|CI525550
genomic: TATCTACGGGGTTAGCCCGTTCCACCCCTAGATTCAGAAAAACACCAGAGgtaatcattt ... ttttgtacagGGAGAAAAGGGAGGTCCGTGTGCAGATAAAAATCAAGAACATGCGAAGGGG
EST: ATCTACGGGGTTAGCCCGTTCCACCCCTAGATTCAGAAAAACACCAGAG GGAGAAAAGGGAGGTCCGTGTGCAGATAAAAATCAAGAACATGCGAAGGGGEST: gi|86601815|gb|CI258491.1|CI258491
genomic: ATCTACGGGGTTAGCCCGTTCCACCCCTAGATTCAGAAAAACACCAGAGgtaatcattt ... ttttgtacagGGAGAAAAGGGAGGTCCGTGTGCAGATAAAAATCAAGAACATGCGAAGGGG
EST: TATCTACGGGGTTAGCCCGTTCCACCCCTAGATTCAGAAAAACACCAGAG GGAGAAAAGGGAGGTCCGTGTGCAGATAAAAATCAAGAACATGCGAAGGGGEST: gi|86525942|gb|CI166148.1|CI166148
genomic: TATCTACGGGGTTAGCCCGTTCCACCCCTAGATTCAGAAAAACACCAGAGgtaatcattt ... ttttgtacagGGAGAAAAGGGAGGTCCGTGTGCAGATAAAAATCAAGAACATGCGAAGGGG
EST: TATCTACGGGGTTAGCCCGTTCCACCCCTAGATTCAGAAAAACACCAGAG GGAGAAAAGGGAGGTCCGTGTGCAGATAAAAATCAAGAACATGCGAAGGGGEST: gi|88375714|gb|CI525808.1|CI525808
genomic: TATCTACGGGGTTAGCCCGTTCCACCCCTAGATTCAGAAAAACACCAGAGgtaatcattt ... ttttgtacagGGAGAAAAGGGAGGTCCGTGTGCAGATAAAAATCAAGAACATGCGAAGGGG
EST: TATCTACGGGGTTAGCCCGTTCCACCCCTAGATTCAGAAAAACACCAGAG GGAGAAAAGGGAGGTCCGTGTGCAGATAAAAATCAAGAACATGCGAAGGGGEST: gi|88437947|gb|CI536106.1|CI536106
genomic: TATCTACGGGGTTAGCCCGTTCCACCCCTAGATTCAGAAAAACACCAGAGgtaatcattt ... ttttgtacagGGAGAAAAGGGAGGTCCGTGTGCAGATAAAAATCAAGAACATGCGAAGGGG
EST: TATCTACGGGGTTAGCCCGTTCCACCCCTAGATTCAGAAAAACACCAGAG GGAGAAAAGGGAGGTCCGTGTGCAGATAAAAATCAAGAACATGCGAAGGGGEST: gi|88254185|gb|CI352811.1|CI352811
genomic: TATCTACGGGGTTAGCCCGTTCCACCCCTAGATTCAGAAAAACACCAGAGgtaatcattt ... ttttgtacagGGAGAAAAGGGAGGTCCGTGTGCAGATAAAAATCAAGAACATGCGAAGGGG
EST: CACCCCTAGATTCAGAAAAACACCAGAG GGAGAAAAGGG-GGTCCGTGTGCAGATAAAAATCAAGAACATGCGAAGGGG
genomic: CACCCCTAGATTCAGAAAAACACCAGAGgtaatcattt ... ttttgtacagGGAGAAAAGGGAGGTCCGTGTGCAGATAAAAATCAAGAACATGCGAAGGGG
ctgattcctgatattatgctagtgttgctgatgagctctcgtctgttttgtacagGGAGAAAAGGGAGGTCCGTGTGCAGATAAAAATCAAGAACATGCGAAGGGGATTCATCGGCTCCGATCACCCTGCATCTCCCAGAATTTGCTGAATTAAT
tgctgat putative branch site (score: 14)
ctctcgtctgtttt putative PPT
tgatattat TA-rich tract