1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...aagaaaacaatgatttacatccttcaatttacctttatatttttttacaattctgttgtgattttcacacagatataaacttctgttgatcatttaacagGTCCTGAGCAATTGAAGCAGAAGCAGGTTAATTCTGATTCATCTGACAAAAAAGATTCACCACTGCAAACTCTGGAACCGTCCACCCTCCAAGCACTTTA
species | Oryza sativa |
transcript | LOC_Os01g56640.3 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TTGTTCAAAAGGTACAACTGTTTGTCAGCCTACAGATGAAGAATCAGGAG GTCCTGAGCAATTGAAGCAGAAGCAGGTTAATTCTGATTCATCTGACAAAAEST: gi|4715422|gb|AU056539.1|AU056539
genomic: TTGTTCAAAAGGTACAACTGTTTGTCAGCCTACAGATGAAGAATCAGGAGgtcaatattt ... catttaacagGTCCTGAGCAATTGAAGCAGAAGCAGGTTAATTCTGATTCATCTGACAAAA
EST: TTGTTCAAAAGGTACAACTGTTTGTCAGCCTACAGATGAAGAATCAGGAG GTCCTGAGCAATTGAAGCAGAAGCAGGTTAATTCTGATTCATCTGACAAAAEST: gi|33680312|gb|CF308551.1|CF308551
genomic: TTGTTCAAAAGGTACAACTGTTTGTCAGCCTACAGATGAAGAATCAGGAGgtcaatattt ... catttaacagGTCCTGAGCAATTGAAGCAGAAGCAGGTTAATTCTGATTCATCTGACAAAA
EST: TTGTTCAAAAGGTACAACTGTTTGTCAGCCTACAGATGAAGAATCAGGAG GTCCTGAGCAATTGAAGCAGAAGCAGGTTAATTCTGATTCATCTGACAAAAEST: gi|5803388|gb|AI978336.1|AI978336
genomic: TTGTTCAAAAGGTACAACTGTTTGTCAGCCTACAGATGAAGAATCAGGAGgtcaatattt ... catttaacagGTCCTGAGCAATTGAAGCAGAAGCAGGTTAATTCTGATTCATCTGACAAAA
EST: TTGTTCAAAAGGTACAACTGTTTGTCAGCCTACAGATGAAGAATCAGGAG GTCCTGAGCAATTGAAGCAGAAGCAGGTTAATTCTGATTCATCTGACAAAA
genomic: TTGTTCAAAAGGTACAACTGTTTGTCAGCCTACAGATGAAGAATCAGGAGgtcaatattt ... catttaacagGTCCTGAGCAATTGAAGCAGAAGCAGGTTAATTCTGATTCATCTGACAAAA
tacaattctgttgtgattttcacacagatataaacttctgttgatcatttaacagGTCCTGAGCAATTGAAGCAGAAGCAGGTTAATTCTGATTCATCTGACAAAAAAGATTCACCACTGCAAACTCTGGAACCGTCCACCCTCCAAGCACTTTA
tgttgat putative branch site (score: 6)
atataaactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagaaaacaatgatttacatccttcaatttacctttatatttttttacaattctgttgtgattttcacacagatataaacttctgttgatcatttaacagGTCCTGAGCAATTGAAGCAGAAGCAGGTTAATTCTGATTCATCTGACAAAAAAGATTCACCACTGCAAACTCTGGAACCGTCCACCCTCCAAGCACTTTA
aagaaaa
- - - - - - - -tacatcc
- - - - - - - - - - - - - - - - - - - - - - - - - - ctgttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acacaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgttga