1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtcaggaccatgcttcatttgagcctgtttactattgtcttgtgtgattcttatgcatttccgatcttttgtcatccagATTCTAAGAAATCTAACCTTTGAGGAGCAGAAATTCTTATATCAGCAGCTTGGGGAAATCTACCGTGAAAGGCAATTAATGCAGAGCTGAGAACTAGTTT
species | Oryza sativa |
transcript | LOC_Os01g55360.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: AATCATTCATATCGCCCCAAAACTACTCTGTTGAGCTAATCTTGGAACAG ATTCTAAGAAATCTAACCTTTGAGGAGCAGAAATTCTTATATCAGCAGCTTEST: gi|88828918|gb|CI073788.1|CI073788
genomic: AATCATTCATATCGCCCCAAAACTACTCTGTTGAGCTAATCTTGGAACAGgtcaggacca ... tgtcatccagATTCTAAGAAATCTAACCTTTGAGGAGCAGAAATTCTTATATCAGCAGCTT
EST: AATCATTCATATCGCCCCAAAACTACTCTGTTGAGCTAATCTTGGAACAG ATTCTAAGAAATCTAACCTTTGAGGAGCAGAAATTCTTATATCAGCAGCTTEST: gi|89162878|gb|CI099768.1|CI099768
genomic: AATCATTCATATCGCCCCAAAACTACTCTGTTGAGCTAATCTTGGAACAGgtcaggacca ... tgtcatccagATTCTAAGAAATCTAACCTTTGAGGAGCAGAAATTCTTATATCAGCAGCTT
EST: AATCATTCATATCGCCCCAAAACTACTCTGTTGAGCTAATCTTGGAACAG ATTCTAAGAAATCTAACCTTTGAGGAGCAGAAATTCTTATATCAGCAGCTTEST: gi|86437554|gb|CI119276.1|CI119276
genomic: AATCATTCATATCGCCCCAAAACTACTCTGTTGAGCTAATCTTGGAACAGgtcaggacca ... tgtcatccagATTCTAAGAAATCTAACCTTTGAGGAGCAGAAATTCTTATATCAGCAGCTT
EST: AATCATTCATATCGCCCCAAAACTACTCTGTTGAGCTAATCTTGGAACAG ATTCTAAGAAATCTAACCTTTGAGGAGCAGAAATTCTTATATCAGCAGCTTEST: gi|89198721|gb|CI003458.1|CI003458
genomic: AATCATTCATATCGCCCCAAAACTACTCTGTTGAGCTAATCTTGGAACAGgtcaggacca ... tgtcatccagATTCTAAGAAATCTAACCTTTGAGGAGCAGAAATTCTTATATCAGCAGCTT
EST: AATCATTCATATCGCCCCAAAACTACTCTGTTGAGCTAATCTTGGAACAG ATTCTAAGAAATCTAACCTTTGAGGAGCAGAAATTCTTATATCAGCAGCTTEST: gi|88844663|gb|CI021238.1|CI021238
genomic: AATCATTCATATCGCCCCAAAACTACTCTGTTGAGCTAATCTTGGAACAGgtcaggacca ... tgtcatccagATTCTAAGAAATCTAACCTTTGAGGAGCAGAAATTCTTATATCAGCAGCTT
EST: AATCATTCATATCGCCCCAAAACTACTCTGTTGAGCTAATCTTGGAACAG ATTCTAAGAAATCTAACCTTTGAGGAGCAGAAATTCTTATATCAGCAGCTTEST: gi|29679198|gb|CB675473.1|CB675473
genomic: AATCATTCATATCGCCCCAAAACTACTCTGTTGAGCTAATCTTGGAACAGgtcaggacca ... tgtcatccagATTCTAAGAAATCTAACCTTTGAGGAGCAGAAATTCTTATATCAGCAGCTT
EST: AATCATTCATATCGCCCCAAAACTACTCTGTTGAGCTAATCTTGGAACAG ATTCTAAGAAATCTAACCTTTGAGGAGCAGAAATTCTTATATCAGCAGCTTEST: gi|88258926|gb|CI359316.1|CI359316
genomic: AATCATTCATATCGCCCCAAAACTACTCTGTTGAGCTAATCTTGGAACAGgtcaggacca ... tgtcatccagATTCTAAGAAATCTAACCTTTGAGGAGCAGAAATTCTTATATCAGCAGCTT
EST: GTTGAGCTAATCTTGGAACAG ATTGTAAGAAATCTAACCTTTGAGGAGCAGAAATTCTTATATCAGCAGCTTEST: gi|86504386|gb|CI147019.1|CI147019
genomic: GTTGAGCTAATCTTGGAACAGgtcaggacca ... tgtcatccagATTCTAAGAAATCTAACCTTTGAGGAGCAGAAATTCTTATATCAGCAGCTT
EST: AATCATTCATATCGCCCCAAAACTACTCTGTTGAGCTAATCTTGGAACAG ATTCTAAGAAATCTAACCTTTGAGGAGCAGAAATTCTTATATCAGCAGCTTEST: gi|88994295|gb|CI117249.1|CI117249
genomic: AATCATTCATATCGCCCCAAAACTACTCTGTTGAGCTAATCTTGGAACAGgtcaggacca ... tgtcatccagATTCTAAGAAATCTAACCTTTGAGGAGCAGAAATTCTTATATCAGCAGCTT
EST: ATCGCCCCAAAACTACTCTGTTGAGCTAATCTTGGAACAG ATTCTAAGAAATCTAACCTTTGAGGAGCAGAAATTCTTATATCAGCAGCTTEST: gi|29681975|gb|CB678250.1|CB678250
genomic: ATCGCCCCAAAACTACTCTGTTGAGCTAATCTTGGAACAGgtcaggacca ... tgtcatccagATTCTAAGAAATCTAACCTTTGAGGAGCAGAAATTCTTATATCAGCAGCTT
EST: AATCATTCATATCGCCCCAAAACTACTCTGTTGAGCTAATCTTGGAACAG ATTCTAAGAAATCTAACCTTTGAGGAGCAGAAATTCTTATATCAGCAGCTTEST: gi|88254829|gb|CI351457.1|CI351457
genomic: AATCATTCATATCGCCCCAAAACTACTCTGTTGAGCTAATCTTGGAACAGgtcaggacca ... tgtcatccagATTCTAAGAAATCTAACCTTTGAGGAGCAGAAATTCTTATATCAGCAGCTT
EST: ACTCTGTTGAGCTAATCTTGGAACAG ATTCTAAGAAATCTAACCTTTGAGGAGCAGAAATTCTTATATCAGCAGCTTEST: gi|29671304|gb|CB667579.1|CB667579
genomic: ACTCTGTTGAGCTAATCTTGGAACAGgtcaggacca ... tgtcatccagATTCTAAGAAATCTAACCTTTGAGGAGCAGAAATTCTTATATCAGCAGCTT
EST: AATCATTCATATCGCCCCAAAACTACTCTGTTGAGCTAATCTTGGAACAG ATTCTAAGAAATCTAACCTTTGAGGAGCAGAAATTCTTATATCAGCAGCTTEST: gi|313081133|gb|HO213719.1|HO213719
genomic: AATCATTCATATCGCCCCAAAACTACTCTGTTGAGCTAATCTTGGAACAGgtcaggacca ... tgtcatccagATTCTAAGAAATCTAACCTTTGAGGAGCAGAAATTCTTATATCAGCAGCTT
EST: AATCATTCATATCGCCCCAAAACTACTCTGTTGAGCTAATCTTGGAACAG ATTCTAAGAAATCTAACCTTTGAGGAGCAGAAATTCTTATATCAGCAGCTTEST: gi|86433541|gb|CI093884.1|CI093884
genomic: AATCATTCATATCGCCCCAAAACTACTCTGTTGAGCTAATCTTGGAACAGgtcaggacca ... tgtcatccagATTCTAAGAAATCTAACCTTTGAGGAGCAGAAATTCTTATATCAGCAGCTT
EST: AATCATTCATATCGCCCCAAAACTACTCTGTTGAGCTAATCTTGGAACAG ATTCTAAGAAATCTAACCTTTGAGGAGCAGAAATTCTTATATCAGCAGCTTEST: gi|88959995|gb|CI381873.1|CI381873
genomic: AATCATTCATATCGCCCCAAAACTACTCTGTTGAGCTAATCTTGGAACAGgtcaggacca ... tgtcatccagATTCTAAGAAATCTAACCTTTGAGGAGCAGAAATTCTTATATCAGCAGCTT
EST: AATCATTCATATCGCCCCAAAACTACTCTTTTGAGCTAATCTTGGAACAG ATTCTAAGAAATCTAACCTTTGAGGAGCAGAAATTCTTATATCAGCAGCTT
genomic: AATCATTCATATCGCCCCAAAACTACTCTGTTGAGCTAATCTTGGAACAGgtcaggacca ... tgtcatccagATTCTAAGAAATCTAACCTTTGAGGAGCAGAAATTCTTATATCAGCAGCTT
ctgtttactattgtcttgtgtgattcttatgcatttccgatcttttgtcatccagATTCTAAGAAATCTAACCTTTGAGGAGCAGAAATTCTTATATCAGCAGCTTGGGGAAATCTACCGTGAAAGGCAATTAATGCAGAGCTGAGAACTAGTTT
tcttttgtc CT-rich tract
attcttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcaggaccatgcttcatttgagcctgtttactattgtcttgtgtgattcttatgcatttccgatcttttgtcatccagATTCTAAGAAATCTAACCTTTGAGGAGCAGAAATTCTTATATCAGCAGCTTGGGGAAATCTACCGTGAAAGGCAATTAATGCAGAGCTGAGAACTAGTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA