1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtatgtatcaattttcctccactatcttcagacatgtcttgagtcctgacaattatgctcttgctgggtcttagTTTGGACGGAAATGGTTCGATCCCAAGGAAACTTCTGGGCTGCGGGACAGAATTCGGGCACTAATGTTTGATGCATTTGAGAGTGCTCGGATGGATGATG
species | Oryza sativa |
transcript | LOC_Os01g53630.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GGTTTATTCAAGAGGCACCAGAGAGGCTGACAAGAGAGAACCTTTGCATG TTTGGACGGAAATGGTTCGATCCCAAGGAAACTTCTGGGCTGCGGGACAGAEST: gi|89166924|gb|CI104210.1|CI104210
genomic: GGTTTATTCAAGAGGCACCAGAGAGGCTGACAAGAGAGAACCTTTGCATGgtatgtatca ... tgggtcttagTTTGGACGGAAATGGTTCGATCCCAAGGAAACTTCTGGGCTGCGGGACAGA
EST: GGTTTATTCAAGAGGCACCAGAGAGGCTGACAAGAGAGAACCTTTGCATG TTTGGACGGAAATGGTTCGATCCCAAGGAAACTTCTGGGCTGCGGGACAGAEST: gi|86485370|gb|CI128003.1|CI128003
genomic: GGTTTATTCAAGAGGCACCAGAGAGGCTGACAAGAGAGAACCTTTGCATGgtatgtatca ... tgggtcttagTTTGGACGGAAATGGTTCGATCCCAAGGAAACTTCTGGGCTGCGGGACAGA
EST: GGTTTATTCAAGAGGCACCAGAGAGGCTGACAAGAGAGAACCTTTGCATG TTTGGACGGAAATGGTTCGATCCCAAGGAAACTTCTGGGCTGCGGGACAGAEST: gi|88502176|gb|CI429682.1|CI429682
genomic: GGTTTATTCAAGAGGCACCAGAGAGGCTGACAAGAGAGAACCTTTGCATGgtatgtatca ... tgggtcttagTTTGGACGGAAATGGTTCGATCCCAAGGAAACTTCTGGGCTGCGGGACAGA
EST: GGTTTATTCAAGAGGCACCAGAGAGGCTGACAAGAGAGAACCTTTGCATG TTTGGACGGAAATGGTTCGATCCCAAGGAAACTTCTGGGCTGCGGGACAGAEST: gi|86478457|gb|CI121090.1|CI121090
genomic: GGTTTATTCAAGAGGCACCAGAGAGGCTGACAAGAGAGAACCTTTGCATGgtatgtatca ... tgggtcttagTTTGGACGGAAATGGTTCGATCCCAAGGAAACTTCTGGGCTGCGGGACAGA
EST: GGTTTATTCAAGAGGCACCAGAGAGGCTGACAAGAGAGAACCTTTGCATG TTTGGACGGAAATGGTTCGATCCCAAGGAAACTTCTGGGCTGCGGGACAGAEST: gi|88519156|gb|CI446810.1|CI446810
genomic: GGTTTATTCAAGAGGCACCAGAGAGGCTGACAAGAGAGAACCTTTGCATGgtatgtatca ... tgggtcttagTTTGGACGGAAATGGTTCGATCCCAAGGAAACTTCTGGGCTGCGGGACAGA
EST: TTATTCAATAGGCACCAGAGAGGCTNACAAGAGAGAACCTGTGCATG TTTGGACGGAAATGGTTCGATCCCAAGGAAACTTCTGGGCTGCGGGACAGA
genomic: TTATTCAAGAGGCACCAGAGAGGCTGACAAGAGAGAACCTTTGCATGgtatgtatca ... tgggtcttagTTTGGACGGAAATGGTTCGATCCCAAGGAAACTTCTGGGCTGCGGGACAGA
cactatcttcagacatgtcttgagtcctgacaattatgctcttgctgggtcttagTTTGGACGGAAATGGTTCGATCCCAAGGAAACTTCTGGGCTGCGGGACAGAATTCGGGCACTAATGTTTGATGCATTTGAGAGTGCTCGGATGGATGATG
tcctgac putative branch site (score: 2)
ctcttgct putative PPT
acaattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtatcaattttcctccactatcttcagacatgtcttgagtcctgacaattatgctcttgctgggtcttagTTTGGACGGAAATGGTTCGATCCCAAGGAAACTTCTGGGCTGCGGGACAGAATTCGGGCACTAATGTTTGATGCATTTGAGAGTGCTCGGATGGATGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA