1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...atgtcaaaaggagaatgtgcatcttgtgaattagagaaactgtggaattcaaccttcaaactgaaatcaaccaataacgtctcatcattcccttttccagGATGCAATGCGGAAGGATACCCTAGAACGCGCAAGAGAGCCAGGGTTCGACCTCAAAGGATACCTGATGAATGCCTACATCCACCCGGTGTTCAAAGGCG
species | Oryza sativa |
transcript | LOC_Os01g35050.3 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: AATACTGCAAGAATCGCTATGAGCCTGCTTTTGTGGAATATCCATTACAG GATGCAATGCGGAAGGATACCCTAGAACGCGCAAGAGAGCCAGGGTTCGACEST: gi|29623286|gb|CB628297.1|CB628297
genomic: AATACTGCAAGAATCGCTATGAGCCTGCTTTTGTGGAATATCCATTACAGgtaatgctca ... ccttttccagGATGCAATGCGGAAGGATACCCTAGAACGCGCAAGAGAGCCAGGGTTCGAC
EST: AATACTGCAAGAATCGCTATGAGCCTGCTTTTGTGGAATATCCATTACAG GATGCAATGCGGAAGGATACCCTAGAACGCGCAAGAGAGCCAGGGTTCGACEST: gi|88243126|gb|CI244248.1|CI244248
genomic: AATACTGCAAGAATCGCTATGAGCCTGCTTTTGTGGAATATCCATTACAGgtaatgctca ... ccttttccagGATGCAATGCGGAAGGATACCCTAGAACGCGCAAGAGAGCCAGGGTTCGAC
EST: AATACTGCAAGAATCGCTATGAGCCTGCTTTTGTGGAATATCCATTACAG GATGCAATGCGGAAGGATACCCTAGAACGCGCAAGAGAGCCAGGGTTCGACEST: gi|88543277|gb|CI473272.1|CI473272
genomic: AATACTGCAAGAATCGCTATGAGCCTGCTTTTGTGGAATATCCATTACAGgtaatgctca ... ccttttccagGATGCAATGCGGAAGGATACCCTAGAACGCGCAAGAGAGCCAGGGTTCGAC
EST: ATACTGCAAGAATCGCTATGAGCCTGCTTTTTTGGAATATCCATTACAG GATGCAATGCGGAAGGATACCCTAGAACGCGCAAGAGAGCCAGGGTTCGACEST: gi|88258873|gb|CI359263.1|CI359263
genomic: ATACTGCAAGAATCGCTATGAGCCTGCTTTTGTGGAATATCCATTACAGgtaatgctca ... ccttttccagGATGCAATGCGGAAGGATACCCTAGAACGCGCAAGAGAGCCAGGGTTCGAC
EST: AATACTGCAAGAATCGCTATGAGCCTGCTTTTGTGGAATATCCATTACAG GATGCAATGCGGAAGGATACCCTAGAACGCGCAAGAGAGCCAGGGTTCGACEST: gi|88375895|gb|CI528199.1|CI528199
genomic: AATACTGCAAGAATCGCTATGAGCCTGCTTTTGTGGAATATCCATTACAGgtaatgctca ... ccttttccagGATGCAATGCGGAAGGATACCCTAGAACGCGCAAGAGAGCCAGGGTTCGAC
EST: GCTTTTGTGGAATATCCATTACAG GATGCAATGCGGAAGGATACCCTAGAACGCGCAAGAGAGCCAGGGTTCGACEST: gi|86835561|gb|CI348018.1|CI348018
genomic: GCTTTTGTGGAATATCCATTACAGgtaatgctca ... ccttttccagGATGCAATGCGGAAGGATACCCTAGAACGCGCAAGAGAGCCAGGGTTCGAC
EST: AATACTGCAAGAATCGCTATGAGCCTGCTTTTGTGGAATATCCATTACAG GATGCAATGCGGAAGGATACCCTAGAACGCGCAAGAGAGCCAGGGTTCGACEST: gi|218495655|gb|FG950469.1|FG950469
genomic: AATACTGCAAGAATCGCTATGAGCCTGCTTTTGTGGAATATCCATTACAGgtaatgctca ... ccttttccagGATGCAATGCGGAAGGATACCCTAGAACGCGCAAGAGAGCCAGGGTTCGAC
EST: AATACTGCAAGAATCGCTATGAGCCTGCTTTAGTGGAATATCCATTACAG GATGCAATGCGGAAGGATACCCTAGAACGCGCAAGAGAGCCAGGATTCGACEST: gi|87007249|gb|CI277324.1|CI277324
genomic: AATACTGCAAGAATCGCTATGAGCCTGCTTTTGTGGAATATCCATTACAGgtaatgctca ... ccttttccagGATGCAATGCGGAAGGATACCCTAGAACGCGCAAGAGAGCCAGGGTTCGAC
EST: AATACTGCAAGAATCGCTATGAGCCTGCTTTTGTGGAATATCCATTACAG GATGCAATGCGGAAGGATACCCTAGAACGCGCAAGAGAGCCAGGGTTCGACEST: gi|89179078|gb|CI043583.1|CI043583
genomic: AATACTGCAAGAATCGCTATGAGCCTGCTTTTGTGGAATATCCATTACAGgtaatgctca ... ccttttccagGATGCAATGCGGAAGGATACCCTAGAACGCGCAAGAGAGCCAGGGTTCGAC
EST: AATACTGCAAGAATCGCTATGAGCCTGCTTTTGTGGAATATCCATTACAG GATGCAATGCGGAAGGATACCCTAGAACGCGCAAGAGAGCCAGGGTTCGACEST: gi|86853189|gb|CI326284.1|CI326284
genomic: AATACTGCAAGAATCGCTATGAGCCTGCTTTTGTGGAATATCCATTACAGgtaatgctca ... ccttttccagGATGCAATGCGGAAGGATACCCTAGAACGCGCAAGAGAGCCAGGGTTCGAC
EST: TGAGCCTGCTTTTGTGGAATATCCATTACAG GATGCAATGCGGAAGGATACCCTAGAACGCGCAAGAGAGGCAGGGTTCGACEST: gi|88252315|gb|CI350743.1|CI350743
genomic: TGAGCCTGCTTTTGTGGAATATCCATTACAGgtaatgctca ... ccttttccagGATGCAATGCGGAAGGATACCCTAGAACGCGCAAGAGAGCCAGGGTTCGAC
EST: AATACTGCAAGAATCGCTATGAGCCTGCTTTTGTGGAATATCCATTACAG GATGCAATGCGGAAGGATACCCTAGAACGCGCAAGAGAGCCAGGGTTCGACEST: gi|58592543|gb|CF990851.1|CF990851
genomic: AATACTGCAAGAATCGCTATGAGCCTGCTTTTGTGGAATATCCATTACAGgtaatgctca ... ccttttccagGATGCAATGCGGAAGGATACCCTAGAACGCGCAAGAGAGCCAGGGTTCGAC
EST: AATACTGCAAGAATCGCTATGAGCCTGCTTTTGTGGAATATCCATTACAG GATGCAATGCGGAAGGATACCCTAGAACGCGCAAGAGAGCCAGGGTTCGACEST: gi|86853732|gb|CI330583.1|CI330583
genomic: AATACTGCAAGAATCGCTATGAGCCTGCTTTTGTGGAATATCCATTACAGgtaatgctca ... ccttttccagGATGCAATGCGGAAGGATACCCTAGAACGCGCAAGAGAGCCAGGGTTCGAC
EST: TGCTTTTTTGGAATATCCATTACAG GATGCAATGCGGAAGGATACCCTAGGACGCGCAAGAGAGCCAGGGTTCGACEST: gi|86822527|gb|CI358041.1|CI358041
genomic: TGCTTTTGTGGAATATCCATTACAGgtaatgctca ... ccttttccagGATGCAATGCGGAAGGATACCCTAGAACGCGCAAGAGAGCCAGGGTTCGAC
EST: CTTTTGTGGAATATCCATTACAG GATGCAATGCGGAA-GATACCCTAGAACGCGCAAGAGAGCCAGGGTTCGACEST: gi|88286267|gb|CI522567.1|CI522567
genomic: CTTTTGTGGAATATCCATTACAGgtaatgctca ... ccttttccagGATGCAATGCGGAAGGATACCCTAGAACGCGCAAGAGAGCCAGGGTTCGAC
EST: CTGCAAGAATCGCTATGAGCCTGCTTTTGTGGAATATCCATTACAG GATGCAATGCGGAAGGATACCCTAGAACGCGCAAGAGAGCCAGGGTTCGACEST: gi|86597881|gb|CI276667.1|CI276667
genomic: CTGCAAGAATCGCTATGAGCCTGCTTTTGTGGAATATCCATTACAGgtaatgctca ... ccttttccagGATGCAATGCGGAAGGATACCCTAGAACGCGCAAGAGAGCCAGGGTTCGAC
EST: AATACTGCAAGAATCGCTATGAGCCTGCTTTTGTGGAATATCCATTACAG GATGCAATGCGGAAGGATACCCTAGAACGCGCAAGAGAGCCAGGGTTCGACEST: gi|218496990|gb|FG950833.1|FG950833
genomic: AATACTGCAAGAATCGCTATGAGCCTGCTTTTGTGGAATATCCATTACAGgtaatgctca ... ccttttccagGATGCAATGCGGAAGGATACCCTAGAACGCGCAAGAGAGCCAGGGTTCGAC
EST: AATACTGCAAGAATCGCTATGAGCCTGCTTTTGTGGAATATCCATTACAG GATGCAATGCGGAAGGATACCCTEST: gi|86874445|gb|CI316811.1|CI316811
genomic: AATACTGCAAGAATCGCTATGAGCCTGCTTTTGTGGAATATCCATTACAGgtaatgctca ... ccttttccagGATGCAATGCGGAAGGATACCCT
EST: AATACTGCAAGAATCGCTATGAGCCTGCTTTTGTGGAATATCCATTACAG GATGCAATGCGGAAGGATACCCTAGAACGCGCAAGAGAGCCAGGGTTCGACEST: gi|86869150|gb|CI335717.1|CI335717
genomic: AATACTGCAAGAATCGCTATGAGCCTGCTTTTGTGGAATATCCATTACAGgtaatgctca ... ccttttccagGATGCAATGCGGAAGGATACCCTAGAACGCGCAAGAGAGCCAGGGTTCGAC
EST: TCGCTATGAGCCTGCTTTTGTGGAATATCCATTACAG GATGCAATGCGGAAGGATACCCTAGAACGCGCAAGAGAGCCAGGGTTCGACEST: gi|58599561|gb|CK010089.1|CK010089
genomic: TCGCTATGAGCCTGCTTTTGTGGAATATCCATTACAGgtaatgctca ... ccttttccagGATGCAATGCGGAAGGATACCCTAGAACGCGCAAGAGAGCCAGGGTTCGAC
EST: AATACTGCAAGAATCGCTATGAGCCTGCTTTTGTGGAATATCCATTAGGG GATGCAATGCGGAAGGATACCCTAGAACGCGCAAGAGAGCCAGGNTTCGACEST: gi|88971739|gb|CI388980.1|CI388980
genomic: AATACTGCAAGAATCGCTATGAGCCTGCTTTTGTGGAATATCCATTACAGgtaatgctca ... ccttttccagGATGCAATGCGGAAGGATACCCTAGAACGCGCAAGAGAGCCAGGGTTCGAC
EST: AATCGCTATGACCCTGCTTTTTTGGAATATCCATTACAG GATGCAATGCGGAAGGATACCCTAGAACGCGCAAGAGAGCCAGGGTTCGACEST: gi|88464480|gb|CI544941.1|CI544941
genomic: AATCGCTATGAGCCTGCTTTTGTGGAATATCCATTACAGgtaatgctca ... ccttttccagGATGCAATGCGGAAGGATACCCTAGAACGCGCAAGAGAGCCAGGGTTCGAC
EST: ATATCCATTACAG GATGCAATGCGGAAGGATACCCTAGAACGCGCAAGAGAGCCAGGGTTCGACEST: gi|86908662|gb|CI318977.1|CI318977
genomic: ATATCCATTACAGgtaatgctca ... ccttttccagGATGCAATGCGGAAGGATACCCTAGAACGCGCAAGAGAGCCAGGGTTCGAC
EST: AATACTGCAAGAATCGCTATGAGCCTGCTTTTGTGGAATATCCATTACAG GATGCAATGCGGAAGGATACCCTAGAACGCGCAAGAGAGCCAGGGTTCGACEST: gi|88508795|gb|CI436301.1|CI436301
genomic: AATACTGCAAGAATCGCTATGAGCCTGCTTTTGTGGAATATCCATTACAGgtaatgctca ... ccttttccagGATGCAATGCGGAAGGATACCCTAGAACGCGCAAGAGAGCCAGGGTTCGAC
EST: AATACTGCAAGAATCGCTATGAGCCTGCTTTTGTGGAATATCCATTACAG GATGCAATGCGGAAGGATACCCTAGAACGCGCAAGAGAGGCAGGGTTCGACEST: gi|88409488|gb|CI561974.1|CI561974
genomic: AATACTGCAAGAATCGCTATGAGCCTGCTTTTGTGGAATATCCATTACAGgtaatgctca ... ccttttccagGATGCAATGCGGAAGGATACCCTAGAACGCGCAAGAGAGCCAGGGTTCGAC
EST: GAATCGCTATGAGCCTGCTTTTGTGGAATATCCATTACAG GATGCAATGCGGAAGGATACCCTAGAACGCGCAAGAGAGCCAGGGTTCGACEST: gi|86600754|gb|CI356511.1|CI356511
genomic: GAATCGCTATGAGCCTGCTTTTGTGGAATATCCATTACAGgtaatgctca ... ccttttccagGATGCAATGCGGAAGGATACCCTAGAACGCGCAAGAGAGCCAGGGTTCGAC
EST: ATACTGCAAGAATCGCTATGAGCCTGCTTTTGTGGAATATCCATTACAG GATGCAATGCGGAAGGATACCCTAGAACGCGCAAGAGAGCCAGGGTTCGACEST: gi|88283652|gb|CI405098.1|CI405098
genomic: ATACTGCAAGAATCGCTATGAGCCTGCTTTTGTGGAATATCCATTACAGgtaatgctca ... ccttttccagGATGCAATGCGGAAGGATACCCTAGAACGCGCAAGAGAGCCAGGGTTCGAC
EST: CCTGCTTTTGTGGAATATCCATTACAG GATGCAATGCGGAAGGATACCCTAGAACGCGCAAGAGAGCCAGGGTTCGACEST: gi|89185595|gb|CI052121.1|CI052121
genomic: CCTGCTTTTGTGGAATATCCATTACAGgtaatgctca ... ccttttccagGATGCAATGCGGAAGGATACCCTAGAACGCGCAAGAGAGCCAGGGTTCGAC
EST: AATACTGCAAGAATCGCTATGAGCCTGCTTTTGTGGAATATCCATTACAG GATGCAATGCGGAAGGATACCCTAGAACGCGCAAGAGAGCCAGGGTTCGACEST: gi|88256336|gb|CI358724.1|CI358724
genomic: AATACTGCAAGAATCGCTATGAGCCTGCTTTTGTGGAATATCCATTACAGgtaatgctca ... ccttttccagGATGCAATGCGGAAGGATACCCTAGAACGCGCAAGAGAGCCAGGGTTCGAC
EST: TGCTTTTGTGGAATATCCATTACAG GATGCAATGCGGAAGGATACCCTAGAACGCGCAAGAGAGCCAGGGTTCGACEST: gi|86528225|gb|CI168431.1|CI168431
genomic: TGCTTTTGTGGAATATCCATTACAGgtaatgctca ... ccttttccagGATGCAATGCGGAAGGATACCCTAGAACGCGCAAGAGAGCCAGGGTTCGAC
EST: AATACTGCAAGAATCGCTATGAGCCTGCTTTTGTGGAATATCCATTACAG GATGCAATGCGGAAGGATACCCTAGAACGCGCAAGAGAGCCAGGGTTCGACEST: gi|88265544|gb|CI376446.1|CI376446
genomic: AATACTGCAAGAATCGCTATGAGCCTGCTTTTGTGGAATATCCATTACAGgtaatgctca ... ccttttccagGATGCAATGCGGAAGGATACCCTAGAACGCGCAAGAGAGCCAGGGTTCGAC
EST: TATCCATTACAG GATGCAATGCGGAAGGATACCCTAGAACGCGCAAGAGAGGCCAGGGTTCGAEST: gi|88507740|gb|CI435246.1|CI435246
genomic: TATCCATTACAGgtaatgctca ... ccttttccagGATGCAATGCGGAAGGATACCCTAGAACGCGCAAGAGA-GCCAGGGTTCGA
EST: CTATGAGCCTGCTTTTGTGGAATATCCATTACAG GATGCAATGCGGAAGGATACCCTAGAACGCGCAAGAGAGCCAGGGTTCGACEST: gi|86881530|gb|CI322585.1|CI322585
genomic: CTATGAGCCTGCTTTTGTGGAATATCCATTACAGgtaatgctca ... ccttttccagGATGCAATGCGGAAGGATACCCTAGAACGCGCAAGAGAGCCAGGGTTCGAC
EST: AATACGGCAAGAATCGCTATGAGCCTGCTTTTGTGGAATATCCATTACAG GATGCAATGCGGAAGGATACCCTAGAACGCGCAAGAGAGCCAGGGTTCGACEST: gi|88427973|gb|CI554481.1|CI554481
genomic: AATACTGCAAGAATCGCTATGAGCCTGCTTTTGTGGAATATCCATTACAGgtaatgctca ... ccttttccagGATGCAATGCGGAAGGATACCCTAGAACGCGCAAGAGAGCCAGGGTTCGAC
EST: TTGTGGAATATCCATTACAG GATGCAATGCGGAAGGATACCCTAGAACGCGCAAGAGAGCCAGGGTTCGACEST: gi|33798947|gb|CF325331.1|CF325331
genomic: TTGTGGAATATCCATTACAGgtaatgctca ... ccttttccagGATGCAATGCGGAAGGATACCCTAGAACGCGCAAGAGAGCCAGGGTTCGAC
EST: AATACTGCAAGAATCGCTATGAGCCTGCTTTTGTGGAATATCCATTACAG GATGCAATGCGGAAGGATACCCTAGAACGCGCAAGAGAGCCAGGGTTCGACEST: gi|88449442|gb|CI534001.1|CI534001
genomic: AATACTGCAAGAATCGCTATGAGCCTGCTTTTGTGGAATATCCATTACAGgtaatgctca ... ccttttccagGATGCAATGCGGAAGGATACCCTAGAACGCGCAAGAGAGCCAGGGTTCGAC
EST: GAATCGCTATGAGCCTGCTTTTGTGGAATATCCATTACAG GATGCAATGCGGAAGGATACCCTAGAACGCGCAAGAGAGCCAGGGTTCGACEST: gi|86881762|gb|CI324077.1|CI324077
genomic: GAATCGCTATGAGCCTGCTTTTGTGGAATATCCATTACAGgtaatgctca ... ccttttccagGATGCAATGCGGAAGGATACCCTAGAACGCGCAAGAGAGCCAGGGTTCGAC
EST: AATACTGCAAGAATCGCTATGAGCCTGCTTTTGTGGAATATCCATTACAG GATGCAATGCGGAAGGATACCCTAGAACGCGCAAGAGAGCCAGGGTTCGAC
genomic: AATACTGCAAGAATCGCTATGAGCCTGCTTTTGTGGAATATCCATTACAGgtaatgctca ... ccttttccagGATGCAATGCGGAAGGATACCCTAGAACGCGCAAGAGAGCCAGGGTTCGAC
aattcaaccttcaaactgaaatcaaccaataacgtctcatcattcccttttccagGATGCAATGCGGAAGGATACCCTAGAACGCGCAAGAGAGCCAGGGTTCGACCTCAAAGGATACCTGATGAATGCCTACATCCACCCGGTGTTCAAAGGCG
caataac putative branch site (score: 1)
cgtctcatcattccct CT-rich tract
aaatcaa TA-rich tract