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gtatggcaatcatttagtgacgacccagaattagatagaattttacaatattttcatcttacaactttaatttattacatacgctcatgatagGTAAGCTCAATTGGCTCGTGGCTTATATGCACCAACGTGTTGGATTTCATCCATGATGCTGGAAGTATGATCAGTTATCACAAGAACCTCACAGGCCAGG
species | Oryza sativa |
transcript | LOC_Os12g15470.2 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CAGCATGGCTGAACAACGATGACGTCAGAGCAGCAATTCATGCCCAACCA GTAAGCTCAATTGGCTCGTGGCTTATATGCACCAACGTGTTTGGATTTCATEST: gi|117240321|gb|CT842747.1|CT842747
genomic: CAGCATGGCTGAACAACGATGACGTCAGAGCAGCAATTCATGCCCAACCAgtatggcaat ... ctcatgatagGTAAGCTCAATTGGCTCGTGGCTTATATGCACCAACGTGTT-GGATTTCAT
EST: CAGCATGGCTGAACAACGATGACGTCAGAGCAGCAATTCATGCCCAACCA GTAAGCTCAATTGGCTCGTGGCT-ATATGCACCAACGTGTTGGGATTTTATEST: gi|58609188|gb|CK037221.1|CK037221
genomic: CAGCATGGCTGAACAACGATGACGTCAGAGCAGCAATTCATGCCCAACCAgtatggcaat ... ctcatgatagGTAAGCTCAATTGGCTCGTGGCTTATATGCACCAACGTGTTGG-ATTTCAT
EST: CAGCATGGCTGAAGAACGATGACGTCAGAGCAGCAATTCATGCCCAACCA GTAAGCTCAATTGGCTCGTGGCTTATATGCACCAACGTGTTGGATTTTATCEST: gi|29638179|gb|CB643188.1|CB643188
genomic: CAGCATGGCTGAACAACGATGACGTCAGAGCAGCAATTCATGCCCAACCAgtatggcaat ... ctcatgatagGTAAGCTCAATTGGCTCGTGGCTTATATGCACCAACGTGTTGGATTTCATC
EST: CAGCATGGCTGAACAACGATGACGTCAGAGCAGCAATTCATGCCCAACCA GTAAGCTCAATTGGCTCGTGGCTTATATGCACCAACGTGTTGGATTTCATCEST: gi|86501069|gb|CI143702.1|CI143702
genomic: CAGCATGGCTGAACAACGATGACGTCAGAGCAGCAATTCATGCCCAACCAgtatggcaat ... ctcatgatagGTAAGCTCAATTGGCTCGTGGCTTATATGCACCAACGTGTTGGATTTCATC
EST: CAACGATGACGTCAGAGCAGCAATTCATGCCCAACCA GTAAGCTCAATTGGCTCGTGGCTTATATGCACCAACGTGTTGGATTTCATCEST: gi|33684071|gb|CF312310.1|CF312310
genomic: CAACGATGACGTCAGAGCAGCAATTCATGCCCAACCAgtatggcaat ... ctcatgatagGTAAGCTCAATTGGCTCGTGGCTTATATGCACCAACGTGTTGGATTTCATC
EST: CAGCATGGCTGAACAACGATGACGTCAGAGCAGCAATTCATGCCCAACCA GTAAGCTCAATTGGCTCGTGGCTTATATGCACCAACGTGTTGGATTTCATCEST: gi|29644492|gb|CB649499.1|CB649499
genomic: CAGCATGGCTGAACAACGATGACGTCAGAGCAGCAATTCATGCCCAACCAgtatggcaat ... ctcatgatagGTAAGCTCAATTGGCTCGTGGCTTATATGCACCAACGTGTTGGATTTCATC
EST: CAGCATGGCTGAACAACGATGACGTCAGAGCAGCAATTCATGCCCAACCA GTAAGCTCAATTGGCTCGTGGCTTATATGCACCAACGTGTTGGATTTCATCEST: gi|29668082|gb|CB664357.1|CB664357
genomic: CAGCATGGCTGAACAACGATGACGTCAGAGCAGCAATTCATGCCCAACCAgtatggcaat ... ctcatgatagGTAAGCTCAATTGGCTCGTGGCTTATATGCACCAACGTGTTGGATTTCATC
EST: CAGCATGGCTGAACAACGATGACGTCAGAGCAGCAATTCATGCCCAACCA GTAAGCTCAATTGGCTCGTGGCTTATATGCACCAACGTGTTGGATTTCATCEST: gi|29661783|gb|CB658058.1|CB658058
genomic: CAGCATGGCTGAACAACGATGACGTCAGAGCAGCAATTCATGCCCAACCAgtatggcaat ... ctcatgatagGTAAGCTCAATTGGCTCGTGGCTTATATGCACCAACGTGTTGGATTTCATC
EST: CAGCATGGCTGAACAACGATGACGTCAGAGCAGCAATTCATGCCCAACCA GTAAGCTCAATTGGCTCGTGGCTTATATGCACCAACGTGTTGGATTTCATCEST: gi|29659837|gb|CB656112.1|CB656112
genomic: CAGCATGGCTGAACAACGATGACGTCAGAGCAGCAATTCATGCCCAACCAgtatggcaat ... ctcatgatagGTAAGCTCAATTGGCTCGTGGCTTATATGCACCAACGTGTTGGATTTCATC
EST: CAGCATGGCTGAACAACGATGACGTCAGAGCAGCAATTCATGCCCAACCA GTAAGCTCAATTGGCTCGTGGCTTATATGCACCAACGTGTTGGATTTCATCEST: gi|29661784|gb|CB658059.1|CB658059
genomic: CAGCATGGCTGAACAACGATGACGTCAGAGCAGCAATTCATGCCCAACCAgtatggcaat ... ctcatgatagGTAAGCTCAATTGGCTCGTGGCTTATATGCACCAACGTGTTGGATTTCATC
EST: CAGCATGGCTGAACAACGATGACGTCAGAGCAGCAATTCATGCCCAACCA GTAAGCTCAATTGGCTCGTGGCTTATATGCACCAACGTGTTGGATTTCATC
genomic: CAGCATGGCTGAACAACGATGACGTCAGAGCAGCAATTCATGCCCAACCAgtatggcaat ... ctcatgatagGTAAGCTCAATTGGCTCGTGGCTTATATGCACCAACGTGTTGGATTTCATC
aattttacaatattttcatcttacaactttaatttattacatacgctcatgatagGTAAGCTCAATTGGCTCGTGGCTTATATGCACCAACGTGTTGGATTTCATCCATGATGCTGGAAGTATGATCAGTTATCACAAGAACCTCACAGGCCAGG
aatattttcatcttac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatggcaatcatttagtgacgacccagaattagatagaattttacaatattttcatcttacaactttaatttattacatacgctcatgatagGTAAGCTCAATTGGCTCGTGGCTTATATGCACCAACGTGTTGGATTTCATCCATGATGCTGGAAGTATGATCAGTTATCACAAGAACCTCACAGGCCAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC