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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaagaatggagtattttttcttactatatatcactgccattcttaaatatgtatatataagcattactcttgttttcttcattctgttcagGTGTGGCAAGCAAAGGCTCCGTGAAGCTAGAATACAAGGCGTTGACTATCTGATCCTGGGCCTTGCTGGTATATGTCTAGGGACATTAGCTAAAGTGAGC

Basic information

species Oryza sativa
transcript LOC_Os06g51460.2
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g51460.1 (Oryza sativa), 3'ss of exon 10
lower sequence: GRMZM2G166889_T01 (Zea mays), 3'ss of exon 10
gtaaaagaatggagtattttttcttactatatatcactgccattcttaaatatgtatatataagcattactcttgttttcttcattctgttcagGTGTGGCAAGCAAAGGCTCCGTGAAGCTAGAATACAAGGCGTTGACTATCTGATCCTGGGCCTTGCTGGTATATGTCTAGGGACATTAGCTAAAGTGAGC
                        ||   |||  |||| |  |  ||  |    | ||  |  |   ||   |  ||| ||| ||||   ||||||||||||||||  |||| || || ||| |||||||||| ||||||||||| || || |||||||| ||||||||||| || ||| | ||||||||||||
-----------------------gtaagttattgcactactttaatttcaccgttgtac-tgggaggtaagttaatttgctt-attcg--tcagGTGTGGCAAGCAGCGGCTTCGAGAGGCTCGAATACAAGGTGTTGACTATCTCATACTTGGCCTTGCCGGTATATGTCTGGGCACACTCGCTAAAGTGAGC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccattcttaaatatgtatatataagcattactcttgttttcttcattctgttcagGTGTGGCAAGCAAAGGCTCCGTGAAGCTAGAATACAAGGCGTTGACTATCTGATCCTGGGCCTTGCTGGTATATGTCTAGGGACATTAGCTAAAGTGAGC
                              ctcttgttttcttcat  CT-rich tract
      ttaaatatgtatatat  TA-rich tract